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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
931 A_BomaMG_comp11294_c0_seq1
769bp
PREDICTED:_neuroblastoma-amplified_sequence-like_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0070939 C Dsl1/NZR complex
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
FPKM:4.12 TPM:3.82
932 A_BomaMG_comp11296_c0_seq1
3205bp
PREDICTED:_uncharacterized_protein_LOC101742598_isoform_X3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:2.40 TPM:2.23
933 A_BomaMG_comp11297_c0_seq1
2159bp
PREDICTED:_gastrulation_defective_protein_1_homolog_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0022008 P neurogenesis
FPKM:3.22 TPM:2.98
934 A_BomaMG_comp11299_c0_seq1
919bp
PREDICTED:_ATP-dependent_zinc_metalloprotease_FTSH_2,_chloroplastic-like_[Malus_domestica]
FPKM:3.25 TPM:3.01
935 A_BomaMG_comp1129_c0_seq1
313bp
PREDICTED:_uncharacterized_protein_LOC106133979_isoform_X2_[Amyelois_transitella]
FPKM:0.77 TPM:0.71
936 A_BomaMG_comp112_c0_seq1
453bp
FPKM:0.87 TPM:0.81
937 A_BomaMG_comp11302_c0_seq1
1624bp
PREDICTED:_negative_elongation_factor_B_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0017053 C transcription repressor complex
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
FPKM:2.74 TPM:2.54
938 A_BomaMG_comp11302_c0_seq2
451bp
hypothetical_protein_KGM_17840_[Danaus_plexippus]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0017053 C transcription repressor complex
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
FPKM:0.00 TPM:0.00
939 A_BomaMG_comp11302_c0_seq3
451bp
PREDICTED:_negative_elongation_factor_B_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0017053 C transcription repressor complex
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
FPKM:3.52 TPM:3.26
940 A_BomaMG_comp113034_c0_seq1
1043bp
PREDICTED:_forkhead_box_protein_J3-like_[Papilio_machaon]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0043565 F sequence-specific DNA binding
FPKM:2.40 TPM:2.22
941 A_BomaMG_comp11303_c0_seq1
1363bp
manganese_transporter_[Chryseobacterium_palustre]
FPKM:2.55 TPM:2.36
942 A_BomaMG_comp113045_c0_seq1
682bp
FPKM:3.05 TPM:2.82
943 A_BomaMG_comp11304_c0_seq1
1046bp
FPKM:2.27 TPM:2.10
944 A_BomaMG_comp11305_c0_seq1
1932bp
PREDICTED:_serine_protease_inhibitor_3_isoform_X1_[Bombyx_mori]
GO:0002020 F protease binding
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0004869 F cysteine-type endopeptidase inhibitor activity
GO:0005615 C extracellular space
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0009411 P response to UV
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030162 P regulation of proteolysis
GO:0030414 F peptidase inhibitor activity
GO:0070062 C extracellular exosome
GO:1902173 P negative regulation of keratinocyte apoptotic process
FPKM:3.30 TPM:3.06
945 A_BomaMG_comp113078_c0_seq1
2047bp
PREDICTED:_F-box_only_protein_42_[Amyelois_transitella]
FPKM:2.54 TPM:2.35
946 A_BomaMG_comp11307_c0_seq1
422bp
PREDICTED:_spectrin_beta_chain_[Bombyx_mori]
FPKM:1.13 TPM:1.04
947 A_BomaMG_comp113083_c0_seq1
648bp
PREDICTED:_PAX3-_and_PAX7-binding_protein_1_[Bombyx_mori]
FPKM:2.69 TPM:2.49
948 A_BomaMG_comp113087_c0_seq1
1399bp
PREDICTED:_WD_repeat-containing_protein_37_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.64 TPM:2.44
949 A_BomaMG_comp11309_c0_seq1
545bp
FPKM:3.63 TPM:3.37
950 A_BomaMG_comp1130_c0_seq1
363bp
Uncharacterised_protein_[Streptococcus_pneumoniae]
FPKM:1.68 TPM:1.55
951 A_BomaMG_comp113108_c0_seq1
414bp
nucleostemin_3_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0015030 C Cajal body
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0051168 P nuclear export
FPKM:3.94 TPM:3.65
952 A_BomaMG_comp113114_c0_seq1
354bp
FPKM:2.55 TPM:2.36
953 A_BomaMG_comp113117_c0_seq1
653bp
FPKM:2.30 TPM:2.13
954 A_BomaMG_comp11311_c0_seq1
4828bp
PREDICTED:_LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001701 P in utero embryonic development
GO:0001709 P cell fate determination
GO:0001889 P liver development
GO:0001890 P placenta development
GO:0001947 P heart looping
GO:0002011 P morphogenesis of an epithelial sheet
GO:0002315 P marginal zone B cell differentiation
GO:0002437 P inflammatory response to antigenic stimulus
GO:0003184 P pulmonary valve morphogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005929 C cilium
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006959 P humoral immune response
GO:0007050 P regulation of cell cycle
GO:0007219 P Notch signaling pathway
GO:0007220 P Notch receptor processing
GO:0007275 P multicellular organism development
GO:0007368 P determination of left/right symmetry
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0009887 P animal organ morphogenesis
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016049 P cell growth
GO:0019899 F enzyme binding
GO:0030154 P cell differentiation
GO:0030326 P embryonic limb morphogenesis
GO:0030513 P positive regulation of BMP signaling pathway
GO:0035264 P multicellular organism growth
GO:0035622 P intrahepatic bile duct development
GO:0042060 P wound healing
GO:0042742 P defense response to bacterium
GO:0043011 P myeloid dendritic cell differentiation
GO:0043065 P positive regulation of apoptotic process
GO:0043235 C receptor complex
GO:0045672 P positive regulation of osteoclast differentiation
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0046849 P bone remodeling
GO:0050793 P regulation of developmental process
GO:0051059 F NF-kappaB binding
GO:0060413 P atrial septum morphogenesis
GO:0060674 P placenta blood vessel development
GO:0061073 P ciliary body morphogenesis
GO:0070986 P left/right axis specification
GO:0072014 P proximal tubule development
GO:0072015 P glomerular visceral epithelial cell development
GO:0072104 P glomerular capillary formation
GO:0072574 P hepatocyte proliferation
GO:0072576 P liver morphogenesis
GO:0072602 P interleukin-4 production
GO:1990705 P cholangiocyte proliferation
FPKM:2.91 TPM:2.70
955 A_BomaMG_comp11312_c0_seq1
482bp
PREDICTED:_IQ_and_AAA_domain-containing_protein_1-like_[Bombyx_mori]
FPKM:2.42 TPM:2.24
956 A_BomaMG_comp113136_c0_seq1
671bp
FPKM:3.11 TPM:2.88
957 A_BomaMG_comp113138_c0_seq1
849bp
PREDICTED:_single-stranded_DNA-binding_protein_3_isoform_X1_[Bombyx_mori]
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006461 P protein-containing complex assembly
GO:0008284 P positive regulation of cell population proliferation
GO:0021501 P prechordal plate formation
GO:0021547 P midbrain-hindbrain boundary initiation
GO:0043234 C protein-containing complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060322 P head development
GO:0060323 P head morphogenesis
GO:2000744 P positive regulation of anterior head development
FPKM:2.79 TPM:2.58
958 A_BomaMG_comp113149_c0_seq1
428bp
PREDICTED:_dnaJ_homolog_subfamily_C_member_13_isoform_X1_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0007032 P endosome organization
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031901 C early endosome membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0070062 C extracellular exosome
GO:0071203 C WASH complex
GO:1902954 P regulation of early endosome to recycling endosome transport
GO:2000641 P regulation of early endosome to late endosome transport
FPKM:3.58 TPM:3.31
959 A_BomaMG_comp11314_c0_seq1
1142bp
PREDICTED:_endophilin-A_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0042171 F lysophosphatidic acid acyltransferase activity
GO:0048488 P synaptic vesicle endocytosis
GO:0050803 P regulation of synapse structure or activity
FPKM:4.16 TPM:3.85
960 A_BomaMG_comp11315_c0_seq1
920bp
protein-tyrosine-phosphatase_[Bradyrhizobium_sp._LTSP849]
FPKM:2.70 TPM:2.50
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