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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
901 A_BomaMG_comp11278_c0_seq1
634bp
FPKM:2.99 TPM:2.77
902 A_BomaMG_comp11279_c0_seq1
1681bp
PREDICTED:_tRNA_pseudouridine_synthase_A,_mitochondrial_[Amyelois_transitella]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
GO:0044822 F RNA binding
FPKM:3.79 TPM:3.51
903 A_BomaMG_comp1127_c0_seq1
339bp
FPKM:1.50 TPM:1.39
904 A_BomaMG_comp1127_c1_seq1
218bp
FPKM:0.75 TPM:0.69
905 A_BomaMG_comp11280_c0_seq1
264bp
FPKM:5.14 TPM:4.76
906 A_BomaMG_comp11281_c0_seq1
1070bp
hypothetical_protein_KGM_17655_[Danaus_plexippus]
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006672 P ceramide metabolic process
GO:0007420 P brain development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016811 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
GO:0017040 F N-acylsphingosine amidohydrolase activity
GO:0019216 P regulation of lipid metabolic process
GO:0046514 P ceramide catabolic process
FPKM:2.51 TPM:2.33
907 A_BomaMG_comp11281_c1_seq1
1534bp
FPKM:2.70 TPM:2.50
908 A_BomaMG_comp11282_c0_seq1
1333bp
FPKM:3.58 TPM:3.32
909 A_BomaMG_comp112831_c0_seq1
270bp
serine_protease_inhibitor_33_precursor_[Bombyx_mori]
FPKM:3.71 TPM:3.44
910 A_BomaMG_comp112835_c0_seq1
568bp
FPKM:3.59 TPM:3.33
911 A_BomaMG_comp11283_c0_seq1
1444bp
PREDICTED:_protein_purity_of_essence_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005856 C cytoskeleton
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
FPKM:3.19 TPM:2.95
912 A_BomaMG_comp112847_c0_seq1
210bp
FPKM:3.49 TPM:3.23
913 A_BomaMG_comp11284_c0_seq1
1502bp
PREDICTED:_nuclear_pore_complex_protein_Nup98-Nup96_isoform_X3_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006810 P transport
GO:0008139 F nuclear localization sequence binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
FPKM:2.69 TPM:2.49
914 A_BomaMG_comp112854_c0_seq1
616bp
minichromosome_maintenance_complex_component_7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005656 C nuclear pre-replicative complex
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006267 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006270 P DNA replication initiation
GO:0007049 P cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0042555 C MCM complex
GO:0043138 F 3'-5' DNA helicase activity
FPKM:3.98 TPM:3.68
915 A_BomaMG_comp11285_c0_seq1
488bp
FPKM:3.21 TPM:2.97
916 A_BomaMG_comp11285_c1_seq1
420bp
FPKM:2.99 TPM:2.76
917 A_BomaMG_comp112863_c0_seq1
267bp
PREDICTED:_ADAMTS-like_protein_1_[Bombyx_mori]
FPKM:3.06 TPM:2.84
918 A_BomaMG_comp11286_c0_seq1
487bp
PREDICTED:_thy-1_membrane_glycoprotein-like_[Poecilia_formosa]
FPKM:5.33 TPM:4.93
919 A_BomaMG_comp11287_c0_seq1
1862bp
PREDICTED:_polyribonucleotide_nucleotidyltransferase_1,_mitochondrial_[Amyelois_transitella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000957 P mitochondrial RNA catabolic process
GO:0000958 P mitochondrial mRNA catabolic process
GO:0000962 P positive regulation of mitochondrial RNA catabolic process
GO:0000964 P mitochondrial RNA 5'-end processing
GO:0000965 P mitochondrial RNA 3'-end processing
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004654 F polyribonucleotide nucleotidyltransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0006810 P transport
GO:0008266 F poly(U) RNA binding
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0034046 F poly(G) binding
GO:0034599 P cellular response to oxidative stress
GO:0035198 F miRNA binding
GO:0035458 P cellular response to interferon-beta
GO:0035927 P RNA import into mitochondrion
GO:0035928 P rRNA import into mitochondrion
GO:0043457 P regulation of cellular respiration
GO:0043631 P RNA polyadenylation
GO:0044822 F RNA binding
GO:0045025 C mitochondrial degradosome
GO:0045926 P negative regulation of growth
GO:0051260 P protein homooligomerization
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070207 P protein homotrimerization
GO:0070584 P mitochondrion morphogenesis
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222 P mitochondrial mRNA polyadenylation
GO:2000627 P positive regulation of miRNA catabolic process
GO:2000772 P regulation of cellular senescence
FPKM:2.80 TPM:2.59
920 A_BomaMG_comp112886_c0_seq1
264bp
FPKM:0.40 TPM:0.37
921 A_BomaMG_comp11288_c0_seq1
1248bp
PREDICTED:_E3_ubiquitin-protein_ligase_RBBP6_[Bombyx_mori]
FPKM:4.25 TPM:3.94
922 A_BomaMG_comp1128_c0_seq1
451bp
PREDICTED:_uncharacterized_protein_LOC101746155_isoform_X1_[Bombyx_mori]
FPKM:1.26 TPM:1.17
923 A_BomaMG_comp11290_c0_seq1
318bp
FPKM:4.44 TPM:4.11
924 A_BomaMG_comp11290_c1_seq1
2098bp
Aspartyl-tRNA_synthetase,_mitochondrial_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004815 F aspartate-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0016874 F ligase activity
GO:0042803 F protein homodimerization activity
GO:0043039 P tRNA aminoacylation
GO:0050560 F aspartate-tRNA(Asn) ligase activity
FPKM:3.43 TPM:3.17
925 A_BomaMG_comp11291_c0_seq1
2964bp
PREDICTED:_uncharacterized_protein_LOC101739889_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005096 F GTPase activator activity
GO:0007165 P signal transduction
GO:0043547 P positive regulation of GTPase activity
FPKM:2.67 TPM:2.48
926 A_BomaMG_comp112925_c0_seq1
1854bp
PREDICTED:_probable_ATP-dependent_RNA_helicase_Dbp45A_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
FPKM:2.02 TPM:1.87
927 A_BomaMG_comp11292_c0_seq1
311bp
PREDICTED:_LOW_QUALITY_PROTEIN:_protein_sidekick_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042675 P compound eye cone cell differentiation
GO:0046533 P negative regulation of photoreceptor cell differentiation
GO:0050931 P pigment cell differentiation
GO:0098595 C perivitelline space
FPKM:4.93 TPM:4.57
928 A_BomaMG_comp11292_c0_seq2
214bp
PREDICTED:_protein_sidekick-like_[Papilio_machaon]
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042675 P compound eye cone cell differentiation
GO:0046533 P negative regulation of photoreceptor cell differentiation
GO:0050931 P pigment cell differentiation
GO:0098595 C perivitelline space
FPKM:0.81 TPM:0.75
929 A_BomaMG_comp112934_c0_seq1
544bp
FPKM:2.80 TPM:2.60
930 A_BomaMG_comp11293_c0_seq1
1118bp
FPKM:3.43 TPM:3.18
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