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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
961 A_BomaMG_comp11315_c1_seq1
408bp
olfactory_receptor_[Bombyx_mori]
FPKM:3.89 TPM:3.60
962 A_BomaMG_comp11317_c0_seq1
727bp
FPKM:2.61 TPM:2.41
963 A_BomaMG_comp11317_c1_seq1
489bp
PREDICTED:_exportin-6_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0015031 P protein transport
FPKM:1.43 TPM:1.33
964 A_BomaMG_comp11319_c0_seq1
322bp
nimrod_B_precursor_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0007224 P smoothened signaling pathway
GO:0007275 P multicellular organism development
GO:0008039 P synaptic target recognition
GO:0008589 P regulation of smoothened signaling pathway
GO:0016055 P Wnt signaling pathway
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0050821 P protein stabilization
FPKM:2.40 TPM:2.22
965 A_BomaMG_comp11319_c0_seq2
363bp
nimrod_B_precursor_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0007224 P smoothened signaling pathway
GO:0007275 P multicellular organism development
GO:0008039 P synaptic target recognition
GO:0008589 P regulation of smoothened signaling pathway
GO:0016055 P Wnt signaling pathway
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0050821 P protein stabilization
FPKM:0.00 TPM:0.00
966 A_BomaMG_comp11319_c0_seq3
1453bp
nimrod_B_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
FPKM:1.97 TPM:1.82
967 A_BomaMG_comp1131_c0_seq1
391bp
PREDICTED:_titin-like_isoform_X12_[Nothobranchius_furzeri]
FPKM:1.46 TPM:1.35
968 A_BomaMG_comp11320_c0_seq1
382bp
FPKM:4.06 TPM:3.76
969 A_BomaMG_comp113210_c0_seq1
856bp
PREDICTED:_protein_cramped_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
FPKM:3.16 TPM:2.93
970 A_BomaMG_comp113222_c0_seq1
283bp
FPKM:4.91 TPM:4.55
971 A_BomaMG_comp11322_c0_seq1
875bp
PREDICTED:_required_for_meiotic_nuclear_division_protein_1_homolog_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0070131 P positive regulation of mitochondrial translation
FPKM:4.00 TPM:3.71
972 A_BomaMG_comp113234_c0_seq1
1221bp
PREDICTED:_ran_GTPase-activating_protein_1_[Papilio_xuthus]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000922 C spindle pole
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007062 P sister chromatid cohesion
GO:0007165 P signal transduction
GO:0008536 F small GTPase binding
GO:0016020 C membrane
GO:0016925 P protein sumoylation
GO:0030425 C dendrite
GO:0031625 F ubiquitin protein ligase binding
GO:0031965 C nuclear membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043547 P positive regulation of GTPase activity
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0046826 P negative regulation of protein export from nucleus
GO:0048471 C perinuclear region of cytoplasm
GO:0048678 P response to axon injury
GO:0071375 P cellular response to peptide hormone stimulus
GO:0072686 C mitotic spindle
GO:1904115 C axon cytoplasm
GO:1904117 P cellular response to vasopressin
GO:1990723 C cytoplasmic periphery of the nuclear pore complex
FPKM:2.77 TPM:2.56
973 A_BomaMG_comp113238_c0_seq1
568bp
hypothetical_protein_ACJ65_02735_[Kocuria_rhizophila]
FPKM:2.09 TPM:1.94
974 A_BomaMG_comp11323_c0_seq1
1491bp
PREDICTED:_coronin-6_isoform_X1_[Bombyx_mori]
GO:0015629 C actin cytoskeleton
GO:0030036 P actin cytoskeleton organization
GO:0051015 F actin filament binding
FPKM:2.64 TPM:2.44
975 A_BomaMG_comp113241_c0_seq1
288bp
PREDICTED:_LOW_QUALITY_PROTEIN:_serine_palmitoyltransferase_2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004758 F serine C-palmitoyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0017059 C serine C-palmitoyltransferase complex
GO:0030148 P sphingolipid biosynthetic process
GO:0030170 F pyridoxal phosphate binding
GO:0046520 P sphingoid biosynthetic process
FPKM:7.20 TPM:6.66
976 A_BomaMG_comp113248_c0_seq1
494bp
hypothetical_protein_bcere0017_2980_[Bacillus_cereus_Rock1-3]
FPKM:2.39 TPM:2.21
977 A_BomaMG_comp11324_c0_seq1
388bp
PREDICTED:_guanylate_cyclase_32E-like_[Bombyx_mori]
FPKM:5.91 TPM:5.47
978 A_BomaMG_comp113258_c0_seq1
398bp
PREDICTED:_graves_disease_carrier_protein-like_isoform_X2_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:3.44 TPM:3.19
979 A_BomaMG_comp11325_c0_seq1
557bp
PREDICTED:_exocyst_complex_component_2_[Bombyx_mori]
GO:0000145 C exocyst
GO:0000281 P mitotic cytokinesis
GO:0005642 C annulate lamellae
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006893 P Golgi to plasma membrane transport
GO:0007269 P neurotransmitter secretion
GO:0007298 P border follicle cell migration
GO:0007349 P cellularization
GO:0010629 P negative regulation of gene expression
GO:0015031 P protein transport
GO:0016028 C rhabdomere
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0017137 F small GTPase binding
GO:0030136 C clathrin-coated vesicle
GO:0032456 P endocytic recycling
GO:0035003 C subapical complex
GO:0035147 P branch fusion, open tracheal system
GO:0043001 P Golgi to plasma membrane protein transport
GO:0045056 P transcytosis
GO:0045087 P innate immune response
GO:0048215 P positive regulation of Golgi vesicle fusion to target membrane
GO:0048599 P oocyte development
GO:0055037 C recycling endosome
GO:0071896 P protein localization to adherens junction
GO:0072659 P protein localization to plasma membrane
GO:0072697 P protein localization to cell cortex
GO:0098793 C presynapse
FPKM:3.97 TPM:3.68
980 A_BomaMG_comp113265_c0_seq1
357bp
PREDICTED:_kinesin-like_protein_KIF21A_isoform_X5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005871 C kinesin complex
GO:0005874 C microtubule
GO:0007018 P microtubule-based movement
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
FPKM:4.24 TPM:3.93
981 A_BomaMG_comp11327_c0_seq1
2116bp
PREDICTED:_methyltransferase-like_protein_13_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
FPKM:3.46 TPM:3.21
982 A_BomaMG_comp11327_c0_seq2
1110bp
Methyltransferase-like_protein_13_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
FPKM:0.00 TPM:0.00
983 A_BomaMG_comp1132_c0_seq1
247bp
PREDICTED:_monocyte_to_macrophage_differentiation_factor_isoform_X2_[Bombyx_mori]
GO:0004672 F protein kinase activity
GO:0004872 F signaling receptor activity
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005887 C integral component of plasma membrane
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019835 P cytolysis
GO:0031902 C late endosome membrane
GO:0032880 P regulation of protein localization
GO:0045666 P positive regulation of neuron differentiation
GO:0045860 P positive regulation of protein kinase activity
FPKM:0.97 TPM:0.90
984 A_BomaMG_comp1132_c1_seq1
209bp
PREDICTED:_monocyte_to_macrophage_differentiation_factor_2_isoform_X2_[Papilio_machaon]
GO:0000139 C Golgi membrane
GO:0004672 F protein kinase activity
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019835 P cytolysis
GO:0032880 P regulation of protein localization
GO:0045666 P positive regulation of neuron differentiation
GO:0045860 P positive regulation of protein kinase activity
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0048471 C perinuclear region of cytoplasm
FPKM:2.67 TPM:2.47
985 A_BomaMG_comp113314_c0_seq1
738bp
PREDICTED:_epsin-2,_partial_[Papilio_xuthus]
FPKM:3.71 TPM:3.44
986 A_BomaMG_comp11331_c0_seq1
1087bp
pleiohomeotic_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000400 F four-way junction DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0010225 P response to UV-C
GO:0010629 P negative regulation of gene expression
GO:0016363 C nuclear matrix
GO:0030154 P cell differentiation
GO:0031011 C Ino80 complex
GO:0034644 P cellular response to UV
GO:0044212 F transcription cis-regulatory region binding
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
FPKM:0.21 TPM:0.19
987 A_BomaMG_comp11331_c0_seq2
2124bp
pleiohomeotic_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000400 F four-way junction DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0010225 P response to UV-C
GO:0010629 P negative regulation of gene expression
GO:0016363 C nuclear matrix
GO:0030154 P cell differentiation
GO:0031011 C Ino80 complex
GO:0034644 P cellular response to UV
GO:0044212 F transcription cis-regulatory region binding
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
FPKM:3.58 TPM:3.31
988 A_BomaMG_comp11332_c0_seq1
2023bp
PREDICTED:_E3_ubiquitin-protein_ligase_UBR1-like_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000502 C proteasome complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0032007 P negative regulation of TOR signaling
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070728 F leucine binding
GO:0071233 P cellular response to leucine
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
FPKM:2.98 TPM:2.76
989 A_BomaMG_comp113336_c0_seq1
717bp
PREDICTED:_protein_split_ends_isoform_X3_[Amyelois_transitella]
FPKM:3.48 TPM:3.22
990 A_BomaMG_comp11333_c0_seq1
543bp
FPKM:4.97 TPM:4.60
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