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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6361 A_BomaMG_comp16041_c0_seq1
551bp
PREDICTED:_golgi-associated_PDZ_and_coiled-coil_motif-containing_protein-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006893 P Golgi to plasma membrane transport
GO:0014069 C postsynaptic density
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0030140 C trans-Golgi network transport vesicle
GO:0030425 C dendrite
GO:0030660 C Golgi-associated vesicle membrane
GO:0042995 C cell projection
GO:0043004 P cytoplasmic sequestering of CFTR protein
GO:0043234 C protein-containing complex
GO:0044325 F transmembrane transporter binding
GO:0045176 P apical protein localization
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0051260 P protein homooligomerization
FPKM:2.29 TPM:2.12
6362 A_BomaMG_comp160428_c0_seq1
281bp
PREDICTED:_talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
FPKM:4.67 TPM:4.32
6363 A_BomaMG_comp160436_c0_seq1
455bp
putative_zinc_finger_protein_84_[Danaus_plexippus]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634 C nucleus
GO:0006342 P heterochromatin assembly
GO:0007275 P multicellular organism development
GO:0007354 P zygotic determination of anterior/posterior axis, embryo
GO:0007400 P neuroblast fate determination
GO:0007402 P ganglion mother cell fate determination
GO:0007411 P axon guidance
GO:0007419 P ventral cord development
GO:0007443 P Malpighian tubule morphogenesis
GO:0007517 P muscle organ development
GO:0010629 P negative regulation of gene expression
GO:0010906 P regulation of glucose metabolic process
GO:0035206 P regulation of hemocyte proliferation
GO:0035220 P wing disc development
GO:0035282 P segmentation
GO:0035290 P trunk segmentation
GO:0040034 P regulation of development, heterochronic
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048749 P compound eye development
GO:0061332 P Malpighian tubule bud morphogenesis
FPKM:1.49 TPM:1.38
6364 A_BomaMG_comp16043_c0_seq1
737bp
PREDICTED:_glycosyltransferase-like_protein_LARGE1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003824 F catalytic activity
GO:0005515 F protein binding
GO:0005794 C Golgi apparatus
GO:0006486 P protein glycosylation
GO:0008152 P metabolic process
GO:0009101 P glycoprotein biosynthetic process
GO:0015020 F glucuronosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030145 F manganese ion binding
GO:0035269 P protein O-linked mannosylation
GO:0042285 F xylosyltransferase activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043403 P skeletal muscle tissue regeneration
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0060538 P skeletal muscle organ development
FPKM:1.71 TPM:1.58
6365 A_BomaMG_comp16044_c0_seq1
455bp
FPKM:1.98 TPM:1.84
6366 A_BomaMG_comp16045_c0_seq1
287bp
FPKM:3.47 TPM:3.22
6367 A_BomaMG_comp160461_c0_seq1
547bp
PREDICTED:_SHC-transforming_protein_1_isoform_X1_[Amyelois_transitella]
GO:0001784 F phosphotyrosine residue binding
GO:0004713 F protein tyrosine kinase activity
GO:0005102 F signaling receptor binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007265 P Ras protein signal transduction
GO:0007417 P central nervous system development
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0030971 F receptor tyrosine kinase binding
GO:0035556 P intracellular signal transduction
FPKM:2.23 TPM:2.06
6368 A_BomaMG_comp16046_c0_seq1
511bp
FPKM:2.26 TPM:2.10
6369 A_BomaMG_comp16046_c1_seq1
411bp
hypothetical_protein_C922_03154_[Plasmodium_inui_San_Antonio_1]
FPKM:1.77 TPM:1.64
6370 A_BomaMG_comp160477_c0_seq1
459bp
FPKM:2.69 TPM:2.49
6371 A_BomaMG_comp16048_c0_seq1
722bp
PREDICTED:_uncharacterized_protein_LOC106111152_[Papilio_polytes]
GO:0000724 P double-strand break repair via homologous recombination
GO:0000729 P DNA double-strand break processing
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006302 P double-strand break repair
GO:0008310 F single-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0008852 F exodeoxyribonuclease I activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.44 TPM:2.26
6372 A_BomaMG_comp16049_c0_seq1
422bp
FPKM:2.40 TPM:2.22
6373 A_BomaMG_comp16050_c0_seq1
807bp
FPKM:1.84 TPM:1.70
6374 A_BomaMG_comp16050_c1_seq1
4552bp
PREDICTED:_pre-mRNA-processing_factor_40_homolog_A_isoform_X2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005685 C U1 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007010 P cytoskeleton organization
GO:0008360 P regulation of cell shape
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016477 P cell migration
GO:0016607 C nuclear speck
GO:0032465 P regulation of cytokinesis
GO:0044822 F RNA binding
GO:0070064 F proline-rich region binding
GO:0071004 C U2-type prespliceosome
FPKM:3.53 TPM:3.27
6375 A_BomaMG_comp16051_c0_seq1
964bp
PREDICTED:_histone-lysine_N-methyltransferase_trithorax-like_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005875 C microtubule associated complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0008023 C transcription elongation factor complex
GO:0008157 F protein phosphatase 1 binding
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008354 P germ cell migration
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0019233 P sensory perception of pain
GO:0032259 P methylation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0043966 P histone H3 acetylation
GO:0044212 F transcription cis-regulatory region binding
GO:0044665 C MLL1/2 complex
GO:0046872 F metal ion binding
GO:0048096 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0051568 P histone H3-K4 methylation
GO:2001020 P regulation of response to DNA damage stimulus
FPKM:1.60 TPM:1.48
6376 A_BomaMG_comp160548_c0_seq1
342bp
kynureninase_[Coxiellaceae_bacterium_CC99]
FPKM:3.35 TPM:3.11
6377 A_BomaMG_comp16054_c0_seq1
375bp
FPKM:1.93 TPM:1.78
6378 A_BomaMG_comp16054_c1_seq1
251bp
FPKM:3.22 TPM:2.98
6379 A_BomaMG_comp16055_c0_seq1
446bp
FPKM:0.77 TPM:0.71
6380 A_BomaMG_comp160568_c0_seq1
417bp
FPKM:2.02 TPM:1.87
6381 A_BomaMG_comp16056_c0_seq1
615bp
FPKM:2.11 TPM:1.95
6382 A_BomaMG_comp16056_c1_seq1
413bp
PREDICTED:_peroxisomal_acyl-coenzyme_A_oxidase_3_[Bombyx_mori]
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005777 C peroxisome
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.20 TPM:2.03
6383 A_BomaMG_comp160571_c0_seq1
293bp
FPKM:0.90 TPM:0.83
6384 A_BomaMG_comp16057_c0_seq1
342bp
hypothetical_protein_M075_3992_[Bacteroides_fragilis_str._20793-3]
FPKM:1.68 TPM:1.56
6385 A_BomaMG_comp16057_c1_seq1
349bp
FPKM:1.21 TPM:1.12
6386 A_BomaMG_comp160580_c0_seq1
284bp
FPKM:3.89 TPM:3.60
6387 A_BomaMG_comp160591_c0_seq1
315bp
PREDICTED:_BRCA1-associated_protein_homolog_2,_partial_[Papilio_polytes]
GO:0000151 C ubiquitin ligase complex
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007265 P Ras protein signal transduction
GO:0008139 F nuclear localization sequence binding
GO:0008270 F zinc ion binding
GO:0009968 P negative regulation of signal transduction
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031965 C nuclear membrane
GO:0042802 F identical protein binding
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
FPKM:3.53 TPM:3.27
6388 A_BomaMG_comp16059_c0_seq1
330bp
FPKM:1.59 TPM:1.47
6389 A_BomaMG_comp160600_c0_seq1
422bp
FPKM:1.55 TPM:1.44
6390 A_BomaMG_comp160607_c0_seq1
269bp
FPKM:2.25 TPM:2.08
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