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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6391 A_BomaMG_comp160616_c0_seq1
370bp
PREDICTED:_MKL/myocardin-like_protein_2_[Amyelois_transitella]
FPKM:3.23 TPM:2.99
6392 A_BomaMG_comp160629_c0_seq1
492bp
PREDICTED:_neurexin-4_isoform_X4_[Bombyx_mori]
GO:0003015 P heart process
GO:0004888 F transmembrane signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005918 C septate junction
GO:0005919 C pleated septate junction
GO:0007155 P cell adhesion
GO:0007163 P establishment or maintenance of cell polarity
GO:0007165 P signal transduction
GO:0007391 P dorsal closure
GO:0008039 P synaptic target recognition
GO:0008065 P establishment of blood-nerve barrier
GO:0008104 P protein localization
GO:0008366 P axon ensheathment
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0019991 P septate junction assembly
GO:0021682 P nerve maturation
GO:0030054 C cell junction
GO:0035151 P regulation of tube size, open tracheal system
GO:0045216 P cell-cell junction organization
GO:0048786 C presynaptic active zone
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
GO:0072553 P terminal button organization
GO:0097105 P presynaptic membrane assembly
FPKM:2.62 TPM:2.43
6393 A_BomaMG_comp16062_c0_seq1
348bp
secretion_system_protein_[Comamonas_testosteroni]
FPKM:1.63 TPM:1.50
6394 A_BomaMG_comp16062_c1_seq1
389bp
FPKM:1.31 TPM:1.21
6395 A_BomaMG_comp160634_c0_seq1
322bp
PREDICTED:_GDNF-inducible_zinc_finger_protein_1-like_[Papilio_xuthus]
FPKM:3.84 TPM:3.55
6396 A_BomaMG_comp160639_c0_seq1
308bp
PREDICTED:_solute_carrier_family_22_member_3-like_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005329 F dopamine:sodium symporter activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006855 P xenobiotic transmembrane transport
GO:0015101 F organic cation transmembrane transporter activity
GO:0015651 F quaternary ammonium group transmembrane transporter activity
GO:0015695 P organic cation transport
GO:0015697 P quaternary ammonium group transport
GO:0015844 P monoamine transport
GO:0015872 P dopamine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019534 F toxin transmembrane transporter activity
GO:0032098 P regulation of appetite
GO:0051608 P histamine transport
GO:0051615 P histamine uptake
GO:0055085 P transmembrane transport
GO:0072488 P ammonium transmembrane transport
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:1901998 P toxin transport
FPKM:4.25 TPM:3.93
6397 A_BomaMG_comp16065_c0_seq1
392bp
FPKM:2.90 TPM:2.68
6398 A_BomaMG_comp16066_c0_seq1
594bp
PREDICTED:_uncharacterized_protein_LOC105841473_[Bombyx_mori]
GO:0000002 P mitochondrial genome maintenance
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000723 P telomere maintenance
GO:0000727 P double-strand break repair via break-induced replication
GO:0000733 P obsolete DNA strand renaturation
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003697 F single-stranded DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0010521 F telomerase inhibitor activity
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031966 C mitochondrial membrane
GO:0032211 P negative regulation of telomere maintenance via telomerase
GO:0032508 P DNA duplex unwinding
GO:0043141 F 5'-3' DNA helicase activity
GO:0044806 P G-quadruplex DNA unwinding
GO:0051276 P chromosome organization
GO:0051880 F G-quadruplex DNA binding
GO:0051974 P negative regulation of telomerase activity
FPKM:1.89 TPM:1.75
6399 A_BomaMG_comp16068_c0_seq1
223bp
FPKM:4.81 TPM:4.45
6400 A_BomaMG_comp16069_c0_seq1
658bp
FPKM:1.85 TPM:1.71
6401 A_BomaMG_comp16070_c0_seq1
447bp
serpin-24_[Bombyx_mori]
FPKM:2.43 TPM:2.25
6402 A_BomaMG_comp16071_c0_seq1
259bp
PREDICTED:_LOW_QUALITY_PROTEIN:_sodium-dependent_neutral_amino_acid_transporter_B(0)AT1-like_[Plutella_xylostella]
FPKM:1.25 TPM:1.16
6403 A_BomaMG_comp160721_c0_seq1
358bp
FPKM:1.34 TPM:1.24
6404 A_BomaMG_comp16072_c0_seq1
305bp
immunoglobulin_J_chain_[Trachemys_scripta]
FPKM:6.25 TPM:5.79
6405 A_BomaMG_comp160735_c0_seq1
302bp
Exportin-6_[Papilio_machaon]
FPKM:3.90 TPM:3.61
6406 A_BomaMG_comp160738_c0_seq1
412bp
FPKM:1.77 TPM:1.63
6407 A_BomaMG_comp16073_c0_seq1
207bp
hypothetical_protein_H072_10020_[Dactylellina_haptotyla_CBS_200.50]
FPKM:2.78 TPM:2.58
6408 A_BomaMG_comp16073_c1_seq1
1052bp
PREDICTED:_zinc_finger_and_BTB_domain-containing_protein_49_[Bombyx_mori]
GO:0002118 P aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007417 P central nervous system development
GO:0007517 P muscle organ development
GO:0007530 P sex determination
GO:0007617 P mating behavior
GO:0007618 P mating
GO:0007620 P copulation
GO:0008049 P male courtship behavior
GO:0016199 P axon midline choice point recognition
GO:0016543 P male courtship behavior, orientation prior to leg tapping and wing vibration
GO:0016544 P male courtship behavior, tapping to detect pheromone
GO:0016545 P male courtship behavior, veined wing vibration
GO:0021954 P central nervous system neuron development
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0046661 P male sex differentiation
GO:0046872 F metal ion binding
GO:0048047 P mating behavior, sex discrimination
GO:0048065 P male courtship behavior, veined wing extension
GO:0048813 P dendrite morphogenesis
GO:0060179 P male mating behavior
FPKM:1.40 TPM:1.30
6409 A_BomaMG_comp160763_c0_seq1
507bp
PREDICTED:_exosome_complex_exonuclease_RRP44_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0006402 P mRNA catabolic process
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0043488 P regulation of mRNA stability
GO:0043547 P positive regulation of GTPase activity
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071034 P CUT catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:2.40 TPM:2.22
6410 A_BomaMG_comp16076_c0_seq1
538bp
FPKM:1.90 TPM:1.76
6411 A_BomaMG_comp16076_c1_seq1
459bp
FPKM:1.83 TPM:1.70
6412 A_BomaMG_comp16077_c0_seq1
506bp
Chromatin_assembly_factor_1_subunit_B_[Operophtera_brumata]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006334 P nucleosome assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0031497 P chromatin assembly
GO:0033186 C CAF-1 complex
GO:0042393 F histone binding
FPKM:2.72 TPM:2.52
6413 A_BomaMG_comp16077_c1_seq1
491bp
Chromatin_assembly_factor_1_subunit_B_[Operophtera_brumata]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006334 P nucleosome assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0031497 P chromatin assembly
GO:0033186 C CAF-1 complex
GO:0042393 F histone binding
FPKM:2.30 TPM:2.13
6414 A_BomaMG_comp16078_c0_seq1
1978bp
Rab7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000421 C autophagosome membrane
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005774 C vacuolar membrane
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006622 P protein targeting to lysosome
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0006914 P autophagy
GO:0007165 P signal transduction
GO:0007174 P epidermal growth factor catabolic process
GO:0007264 P small GTPase mediated signal transduction
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016042 P lipid catabolic process
GO:0019003 F GDP binding
GO:0019076 P viral release from host cell
GO:0022615 P protein to membrane docking
GO:0030670 C phagocytic vesicle membrane
GO:0030904 C retromer complex
GO:0031410 C cytoplasmic vesicle
GO:0031902 C late endosome membrane
GO:0032419 C extrinsic component of lysosome membrane
GO:0033162 C melanosome membrane
GO:0034045 C phagophore assembly site membrane
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043195 C terminal bouton
GO:0043231 C intracellular membrane-bounded organelle
GO:0045022 P early endosome to late endosome transport
GO:0045335 C phagocytic vesicle
GO:0045453 P bone resorption
GO:0045732 P positive regulation of protein catabolic process
GO:0048365 F small GTPase binding
GO:0048524 P positive regulation of viral process
GO:0061724 P lipophagy
GO:0070062 C extracellular exosome
GO:0090383 P phagosome acidification
GO:0090385 P phagosome-lysosome fusion
GO:0097208 C alveolar lamellar body
GO:1903543 P positive regulation of exosomal secretion
GO:2000785 P regulation of autophagosome assembly
FPKM:40.01 TPM:37.05
6415 A_BomaMG_comp160797_c0_seq1
317bp
PREDICTED:_SHC-transforming_protein_1_isoform_X1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006915 P apoptotic process
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0008284 P positive regulation of cell population proliferation
GO:0010468 P regulation of gene expression
GO:0016020 C membrane
GO:0019904 F protein domain specific binding
GO:0030054 C cell junction
GO:0030971 F receptor tyrosine kinase binding
GO:0035556 P intracellular signal transduction
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0048863 P stem cell differentiation
FPKM:3.48 TPM:3.22
6416 A_BomaMG_comp16080_c0_seq1
1112bp
PREDICTED:_probable_alpha-aspartyl_dipeptidase_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0008239 F dipeptidyl-peptidase activity
GO:0016787 F hydrolase activity
GO:0016805 F dipeptidase activity
FPKM:55.65 TPM:51.53
6417 A_BomaMG_comp160812_c0_seq1
647bp
hypothetical_protein_[Treponema_medium]
FPKM:1.75 TPM:1.62
6418 A_BomaMG_comp160817_c0_seq1
304bp
tetraacyldisaccharide_4'-kinase_[Anaerovibrio_lipolyticus]
FPKM:2.19 TPM:2.03
6419 A_BomaMG_comp16081_c0_seq1
290bp
FPKM:1.54 TPM:1.42
6420 A_BomaMG_comp16081_c1_seq1
306bp
FPKM:3.51 TPM:3.25
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