| Name | A_BomaMG_comp16050_c1_seq1 |
| Scaffold_id | |
NCBI non-redundant
(nr) | PREDICTED:_pre-mRNA-processing_factor_40_homolog_A_isoform_X2_[Bombyx_mori] |
| Ontology |
| GO:0000398 |
P |
mRNA splicing, via spliceosome |
| GO:0003723 |
F |
RNA binding |
| GO:0005515 |
F |
protein binding |
| GO:0005634 |
C |
nucleus |
| GO:0005654 |
C |
nucleoplasm |
| GO:0005685 |
C |
U1 snRNP |
| GO:0005737 |
C |
cytoplasm |
| GO:0006397 |
P |
mRNA processing |
| GO:0007010 |
P |
cytoskeleton organization |
| GO:0008360 |
P |
regulation of cell shape |
| GO:0008380 |
P |
RNA splicing |
| GO:0016020 |
C |
membrane |
| GO:0016363 |
C |
nuclear matrix |
| GO:0016477 |
P |
cell migration |
| GO:0016607 |
C |
nuclear speck |
| GO:0032465 |
P |
regulation of cytokinesis |
| GO:0044822 |
F |
RNA binding |
| GO:0070064 |
F |
proline-rich region binding |
| GO:0071004 |
C |
U2-type prespliceosome |
|
Transcript
Level | FPKM:3.53 TPM:3.27 |
| ORF Entry | |
Sequence
(Nucleotide) | GTTGTGTACAAGAGGTCCCACCTTGCGTTTTATTAATTTGAACTACTACCATTACATACA
TTACAATAATTCATTTTGTGCCTTTCCAACTATAATAACATTTTGTTGCCGACAGTTTAC
GATTTATTAAGTCTAGTTCTTACTTAAAAAAAAATAATTAAAAAGCGACAGTATTTGGTA
GCCCAGTCATGGAGCCACCCAGTGCGGGGACCAGTTCTCCGGGTCTCTTAAACGCGCCTC
CTCTTTTACCGCCTCCAATGCTAAGCGGTATGCCTCCACCAATGCCGCCCGCTGTGGCAA
TGCCACCAGTGCCTGGGCTACCTCCAAATATGGCTACATTACCACCGCCCATGGGCTTTC
CTCCCATGTTGCCGCCTCCATTTTCCATACCACCGCCAGGATTCCCTGCATTCAAACCGG
AATTAAATGCTCCTGCACCAGATGTTGCTCCATCGGCAAATCAAAGTAGTCCATGGTCTG
AACATAAGGCCCCTGATGGAAGAACATATTACTATAATTCTGTAACCAAACAAAGCTTGT
GGGAAAAACCTGACGACTTAAAAACGTCAGCTGAGAAACTATTATCTGCTTGTGTATGGA
AAGAATATACCACAAATACTGGCAGACTTTACTATCATAATATTGAGACAAAGGAGTCCA
GTTGGGTAGTACCAAAAGAATTACAGGAGATTAAAGACAAAATTGCTGCTGAAGAAGCTG
CTCAGCGCATTGTGATGGAAGTAACACCGAGTGAGGTGCCGCTGCCGGCAGAGCCTGCAG
GCTCCTCCGCCCTTGACGAAGCTATGGCTAAAACATTAGCAGCCATTGATACCTCATTGG
CCACATCCATACCTGTACCTGACGAAAAACCAGAAGACACAGTTTCAATTAATAATGAAA
CTCAAGAACAGCCGGAGATGTTGTACAAAGACAAGAAAGAGGCTATTGAAGCATTTAAAG
AACTCCTGAAAGATAAGAATATACCCTCAAATGCAACATGGGAACAATGTGTAAAAGTTA
TTTCAAAAGACCCACGATATGTCACTTTTAAAAAACTCAATGAAAAGAAACAAGCGTTCA
ATGCTTACAAAACTCAAAAATTAAAAGATGAAAGAGAGGAACAGAGACTGAAAACAAAAA
AAAATCGGGAGAATCTTGAAGAGTTTTTGTTGAGTTGCGAACGGGTGACATCTCTGACAA
AATTTTACAAATGTGAAGAAATGTTCAGCAATCTAGAGATTTGGCGATGTGTTCCAGAAG
CCGATCGTAGGGACATATTTGAAGATTGTATTTTTACTATAGCGAAACGGGAAAAAGAAG
AAGCAAAGGCTTTAAAGAAACGGAATATGAAAATGTTAACCCAGGTATTAGAGAACATGA
GCGAAATTACGTACAGTAGTACGTGGAGTGAGGCACAAGTACTATTGCTTGAAAATTCAG
CTTTTAAAAATGATGTTAGTTTACTAGGTATGGACAAGGAAGATGCCCTGATTGTATTTG
AACAACACATACGAAATTTAGAAGCTGAATATCAACAAGAAAGAGAACAAATTAAAAAGA
GGAATAAAAGACAACAAAGAAAAAATAGAGACAACTTTTTGGCTTTGCTGGACAGTCTTC
ATGAAGAAGGTAAATTGACATCGATGTCTCTATGGGTCGAGCTGTATCCGGTTATTTCTG
CAGACATGAGATTTTCAGCTATGTTAGGACAAAGCGGATCGACACCGTTAGACTTATTCA
AGTTTTACGTTGAAAATTTGAAAGCGAGGTTCCACGACGAAAAGAAGATAATAAAGGAGA
TACTGAAAGACAAGAATTTCGAAGTTAAACCCGAGACCACGTTCGAGGAGTTCGCCACCG
TCGTGTGCGAGGACAGCAAGTCCGCCTCGCTCGACGCCGGAAATGTCAAACTTACTTACA
ATTCGCTTTTAGAAAAGGCTGAAACTAGAAAGAAGGAGAAATTGAAAGAAGAATCGAAAG
CTCAAAAGAAAATAGAATCTGCATTTAAATGGGCATTGAGTGATGCAAACATCGACCACC
TGCTCTCGTGGAGCGAGGTTAAGGAGAAACTTGACTTGAACGCGCCAGAGTTTGCCGCCG
TCACCAGTGAAGAAGACAGAATTAGAATTTATAAGGATTATCAGCATGAACAAGAAGAAA
GCTGCATGCACTATCACCATCCAAAACCAAAGAAGTCCAAACGATCAAAGAAGAAGAAGC
GTTCTCACTCTGCCTCTTTGTCTCGGTCAGCATCAGCGTCGCGGTCGCCATCCCCGGCGC
CGAGCCACGGCACTTGGAGCTCCGACGAGGGCCGGAAACCCAAGAAAACTAAGAAGAAGC
ATCGGAGGCACTCTCCCGCTCCGAAATCACCGTCTCCCGAGGAGGGTGGCATCACAGACG
ACGAAGAAGTGATTCGGCACAAAAACAAAAAGACGAAACGCAGTGCGCCCAGCAGCCCGG
AAGAGGAACAGGAACCGGAAATCGTTTACAAACCCAAGAAGAAGAAGGACAAGAAAGATA
AAAAAGAGAGGTCGGGTGCGGCGTGGAGTGACGCCGACCTGGAGTCGCGTCGTGCGGCGC
TGCTAGCTCAGCTGCACGAGCACGAGGCGGACTGACGTCGCGTCACACACGTGCACATCT
TCAACCAGTACCCCGCACAGTCGCGAGCGCAACCCTCCTCCTCGTCAACAACCACACAAA
ACAAGGGCCAAGTGAAAAAAGGGCTTGAGGAACAAAAACAACACTAAAATAATATTTCCT
CGCTCATACTGTTACAGCGCGTTGCTTTATTTTCCTGTAAGGCTAAACTTGAATTAAAAA
AAACCATTAAAAGTTCTATTTATTGTTTAACAAGAACAAAATTAAAGATGGCGGTATAAA
AGAAACGACATGAAATAAAACGGTATTCGTATATGAAACATGTCTATCACTTACTATTCG
ATTGGAAATCCAAAGACAATCATTTTTCCACTTGCCTCGGGTTCGCGGAAAGCTTCGCGT
TCGTAAATCTGCCATTCGTGTGTAATCTCTGCGGTCGTACTGTTTAGCACGATATGAATC
AATAAAGTTTTCCTATAGATTAGCCAGTGACAAGACGAGTCGCGTGTCTTACGTTTATAA
TGTTTATAATGCCTAACAGCTTAGGAGAGTACTTATATAAATTTTATTGTAAAACATAAA
ATATATCATTATTATTTATATAAAAAAATTCTAACCTTTTGTGTTTACCTGCCTGCCTTC
CAATTAATTCATAGATCATTTGGAACCATTGCAAGAGTTTATAATGTATAAATATTTAGA
TTATAATTTATAGTTCATGTGGAGTAAAGAAATTCAATATGAAATAATGTAAAATAACCC
AAATTATGTAATAATGTAATTTGTGTCGTGCAATGCAATCACATATGATGAACATTTTTC
TTACACTAGATGGAAAGTGTAGATATATAGATGTAATATAATATGACATAAATGGTAAGT
ATAATAATAGTTATTATCTACTTTTTACTAGAGTAAAAATACCTACTAATGGAAACAGAT
AATTTGATAATAAAAATGAACATGCAACACCACAAGACTTGCGTGTGTCAGCAAACATGA
CATAAGGCAATCACCCTGTTTTTTAACATTGATTTCTTCGATACGATTACTAACCACGCT
CCAAATCTATGATTAAAAATCAAACAAATTGATTAAACTATTTTTGGGATGGAAATCAGT
TGGTAAAATACAGTTTTGTGAAAAACTCACTTAAAAGAGTATATGGGAATAATACAATTT
AATATTTAGTCACCATCTATCTGCTAGGCCTCTTCCAATAAGGAAAGTCCATTCTTTTTC
TTCAGTTTTAAATCTTCTTCTTTCGTTATAGTTTCTTTCCTGGCCCTTTTTACGAGAAGG
TGTAATTTTATAATTTGTTAGAATTTCTAGGAAACCGTTTTCTAGACCATTATCGAAAAA
AATCCCTATTCGTTGCGAAAATGAACAGACGGAGCGAACTAACTGATCCTAATTTAGAGT
TGATTTTCATAGTGCTTTCTATATTTTGAATTGAATCTCATTTTGAAAATATGGCAACAA
AAGCGACCTTAGAATTTTTTTACATGTATGGGCCTTATGCCTCGGCGAGCCTCAGCTCGC
ATGCATCGCATCGCAGCATGTATGTATGTAATCAGCGCTCTGGACATTGCAACTTTGGAA
CAGCTTTGTACATTTGACCAGTACATTGTAGAAATGTTTGTGAATCGATTTATAAAAAAG
CCTTTTTTTTTTTTCTCAAAATATCACTCTGATTGACTGTCTTTTGTGGTTTTCGTGTAG
ACTACCATGAAATTCTTTCAAAGCTCAATAGGTAAATATTTTCATCAGGTATAATATAGT
ATTTACAATAATGAAAATAATCAACTCGTTACGATGAAATTATACGCGTAGCAAACTTAG
AATATTTTATGTTACAGATGTTTTGTTACACGTAGTTACCGTTTCGTTTTCAATGCTTAA
CGAAATGGTTTATATAGTATTAAGTTATGTAGTAATAATATTGAACTCGTCG
(4552 bp) |
