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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
451 A_BomaMG_comp108712_c0_seq1
299bp
PREDICTED:_ATP-dependent_RNA_helicase_abstrakt_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006915 P apoptotic process
GO:0007399 P nervous system development
GO:0008270 F zinc ion binding
GO:0009653 P anatomical structure morphogenesis
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0030010 P establishment of cell polarity
GO:0046872 F metal ion binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:6.27 TPM:5.81
452 A_BomaMG_comp10871_c0_seq1
402bp
FPKM:4.61 TPM:4.27
453 A_BomaMG_comp10872_c0_seq1
563bp
PREDICTED:_D-tyrosyl-tRNA(Tyr)_deacylase_1_[Papilio_polytes]
GO:0002161 F aminoacyl-tRNA editing activity
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006399 P tRNA metabolic process
GO:0006450 P regulation of translational fidelity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0019478 P D-amino acid catabolic process
GO:0046872 F metal ion binding
GO:0051500 F D-tyrosyl-tRNA(Tyr) deacylase activity
FPKM:0.87 TPM:0.80
454 A_BomaMG_comp10872_c0_seq2
654bp
PREDICTED:_D-tyrosyl-tRNA(Tyr)_deacylase_1_[Papilio_polytes]
GO:0002161 F aminoacyl-tRNA editing activity
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006399 P tRNA metabolic process
GO:0006450 P regulation of translational fidelity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0019478 P D-amino acid catabolic process
GO:0046872 F metal ion binding
GO:0051500 F D-tyrosyl-tRNA(Tyr) deacylase activity
FPKM:2.81 TPM:2.60
455 A_BomaMG_comp108734_c0_seq1
411bp
PREDICTED:_ATP-dependent_Clp_protease_ATP-binding_subunit_clpX-like,_mitochondrial_isoform_X1_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0004176 F ATP-dependent peptidase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006457 P protein folding
GO:0006508 P proteolysis
GO:0008150 P biological_process
GO:0009368 C endopeptidase Clp complex
GO:0009841 C mitochondrial endopeptidase Clp complex
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016887 F ATP hydrolysis activity
GO:0030163 P protein catabolic process
GO:0042645 C mitochondrial nucleoid
GO:0046872 F metal ion binding
GO:0051082 F unfolded protein binding
GO:0051603 P proteolysis involved in cellular protein catabolic process
FPKM:3.69 TPM:3.42
456 A_BomaMG_comp10873_c0_seq1
1330bp
PREDICTED:_titin-like_isoform_X2_[Bombyx_mori]
FPKM:2.74 TPM:2.54
457 A_BomaMG_comp10874_c0_seq1
303bp
PREDICTED:_uncharacterized_protein_LOC106136884_[Amyelois_transitella]
FPKM:2.76 TPM:2.56
458 A_BomaMG_comp10875_c0_seq1
368bp
FPKM:1.63 TPM:1.51
459 A_BomaMG_comp10876_c0_seq1
221bp
FPKM:0.71 TPM:0.66
460 A_BomaMG_comp10877_c0_seq1
1108bp
FPKM:2.85 TPM:2.64
461 A_BomaMG_comp10878_c0_seq1
460bp
FPKM:0.96 TPM:0.89
462 A_BomaMG_comp10878_c0_seq2
988bp
PREDICTED:_oxidoreductase-like_domain-containing_protein_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0008150 P biological_process
FPKM:2.48 TPM:2.30
463 A_BomaMG_comp108798_c0_seq1
260bp
serine_protease_inhibitor_33_precursor_[Bombyx_mori]
FPKM:3.72 TPM:3.45
464 A_BomaMG_comp10879_c0_seq1
851bp
Uncharacterized_protein_OBRU01_02243_[Operophtera_brumata]
FPKM:2.78 TPM:2.58
465 A_BomaMG_comp10880_c0_seq1
1600bp
PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_CBL-B-B_[Papilio_machaon]
GO:0001784 F phosphotyrosine residue binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0004871 F obsolete signal transducer activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007166 P cell surface receptor signaling pathway
GO:0008270 F zinc ion binding
GO:0014068 P positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016600 C flotillin complex
GO:0016874 F ligase activity
GO:0017124 F SH3 domain binding
GO:0023051 P regulation of signaling
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043066 P negative regulation of apoptotic process
GO:0045453 P bone resorption
GO:0046872 F metal ion binding
GO:0046875 F ephrin receptor binding
GO:0048260 P positive regulation of receptor-mediated endocytosis
FPKM:2.43 TPM:2.25
466 A_BomaMG_comp108810_c0_seq1
1437bp
PREDICTED:_bm8_interacting_protein_2d-4_isoform_X1_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0001756 P somitogenesis
GO:0001840 P neural plate development
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0004872 F signaling receptor activity
GO:0005509 F calcium ion binding
GO:0005634 C nucleus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007368 P determination of left/right symmetry
GO:0009952 P anterior/posterior pattern specification
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021514 P ventral spinal cord interneuron differentiation
GO:0021523 P somatic motor neuron differentiation
GO:0021531 P spinal cord radial glial cell differentiation
GO:0021986 P habenula development
GO:0030154 P cell differentiation
GO:0031016 P pancreas development
GO:0031017 P exocrine pancreas development
GO:0035907 P dorsal aorta development
GO:0042663 P regulation of endodermal cell fate specification
GO:0046872 F metal ion binding
GO:0048259 P regulation of receptor-mediated endocytosis
GO:0048337 P positive regulation of mesodermal cell fate specification
GO:0048699 P generation of neurons
GO:0048936 P peripheral nervous system neuron axonogenesis
GO:0050768 P negative regulation of neurogenesis
GO:0050793 P regulation of developmental process
GO:0055016 P hypochord development
GO:0060271 P cilium assembly
GO:0061314 P Notch signaling involved in heart development
FPKM:3.42 TPM:3.17
467 A_BomaMG_comp10881_c0_seq1
1689bp
PREDICTED:_JNK1/MAPK8-associated_membrane_protein_[Amyelois_transitella]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0031625 F ubiquitin protein ligase binding
FPKM:2.07 TPM:1.92
468 A_BomaMG_comp10881_c0_seq2
1663bp
PREDICTED:_JNK1/MAPK8-associated_membrane_protein_[Amyelois_transitella]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0031625 F ubiquitin protein ligase binding
FPKM:0.61 TPM:0.56
469 A_BomaMG_comp10883_c0_seq1
266bp
FPKM:0.77 TPM:0.72
470 A_BomaMG_comp10885_c0_seq1
1147bp
TBP_SPOFR_RecName:_Full=TATA-box-binding_protein;_AltName:_Full=TATA_sequence-binding_protein;_Short=TBP;_AltName:_Full=TATA-binding_factor;_AltName:_Full=TATA-box_factor;_AltName:_Full=Transcription_initiation_factor_TFIID_TBP_subunit
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
FPKM:4.28 TPM:3.96
471 A_BomaMG_comp108865_c0_seq1
338bp
PREDICTED:_protein_pigeon_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:4.53 TPM:4.20
472 A_BomaMG_comp10886_c0_seq1
1603bp
PREDICTED:_beta-TrCP_isoform_X2_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000209 P protein polyubiquitination
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006470 P protein dephosphorylation
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007165 P signal transduction
GO:0008013 F beta-catenin binding
GO:0016032 P viral process
GO:0016055 P Wnt signaling pathway
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019005 C SCF ubiquitin ligase complex
GO:0030163 P protein catabolic process
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031648 P protein destabilization
GO:0033598 P mammary gland epithelial cell proliferation
GO:0038061 P NIK/NF-kappaB signaling
GO:0038095 P Fc-epsilon receptor signaling pathway
GO:0042752 P regulation of circadian rhythm
GO:0042753 P positive regulation of circadian rhythm
GO:0043122 P regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0045309 F protein phosphorylated amino acid binding
GO:0045862 P positive regulation of proteolysis
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046983 F protein dimerization activity
GO:0048511 P rhythmic process
GO:0050852 P T cell receptor signaling pathway
GO:0051403 P stress-activated MAPK cascade
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0051726 P regulation of cell cycle
GO:0060444 P branching involved in mammary gland duct morphogenesis
GO:0060828 P regulation of canonical Wnt signaling pathway
GO:0061136 P regulation of proteasomal protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0071407 P cellular response to organic cyclic compound
FPKM:3.00 TPM:2.78
473 A_BomaMG_comp10887_c0_seq1
1006bp
eIF2B-beta_protein_[Bombyx_mori]
GO:0001541 P ovarian follicle development
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0007417 P central nervous system development
GO:0014003 P oligodendrocyte development
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0042552 P myelination
GO:0043547 P positive regulation of GTPase activity
GO:0044237 P cellular metabolic process
GO:0046523 F S-methyl-5-thioribose-1-phosphate isomerase activity
GO:0051716 P cellular response to stimulus
FPKM:0.53 TPM:0.50
474 A_BomaMG_comp10887_c0_seq2
1183bp
eIF2B-beta_protein_[Bombyx_mori]
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0007417 P central nervous system development
GO:0014003 P oligodendrocyte development
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0042552 P myelination
GO:0043547 P positive regulation of GTPase activity
GO:0044237 P cellular metabolic process
GO:0046523 F S-methyl-5-thioribose-1-phosphate isomerase activity
GO:0051716 P cellular response to stimulus
FPKM:2.40 TPM:2.22
475 A_BomaMG_comp10888_c0_seq1
3001bp
PREDICTED:_inter-alpha-trypsin_inhibitor_heavy_chain_H4-like_isoform_X1_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0006953 P acute-phase response
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030212 P hyaluronan metabolic process
GO:0030414 F peptidase inhibitor activity
FPKM:2.20 TPM:2.03
476 A_BomaMG_comp10890_c0_seq1
1714bp
PREDICTED:_uncharacterized_protein_LOC106110631_isoform_X2_[Papilio_polytes]
FPKM:2.63 TPM:2.43
477 A_BomaMG_comp10891_c0_seq1
2085bp
PREDICTED:_KIF1-binding_protein_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005856 C cytoskeleton
GO:0006839 P mitochondrial transport
GO:0007399 P nervous system development
GO:0019894 F kinesin binding
FPKM:2.67 TPM:2.47
478 A_BomaMG_comp10893_c0_seq1
690bp
PREDICTED:_uncharacterized_protein_LOC106134498_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0016032 P viral process
GO:0044822 F RNA binding
GO:0046778 P modification by virus of host mRNA processing
GO:0046872 F metal ion binding
FPKM:3.31 TPM:3.07
479 A_BomaMG_comp10893_c0_seq2
906bp
PREDICTED:_uncharacterized_protein_LOC106134498_[Amyelois_transitella]
FPKM:0.90 TPM:0.83
480 A_BomaMG_comp108955_c0_seq1
278bp
GntR_family_transcriptional_regulator_[Streptomyces_scabiei]
FPKM:1.03 TPM:0.95
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