SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
421 A_BomaMG_comp10850_c0_seq1
602bp
hypothetical_protein_[Porticoccus_hydrocarbonoclasticus]
FPKM:3.63 TPM:3.36
422 A_BomaMG_comp10852_c0_seq1
665bp
PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_16_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:3.50 TPM:3.24
423 A_BomaMG_comp10852_c1_seq1
204bp
PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_16_[Bombyx_mori]
FPKM:1.98 TPM:1.83
424 A_BomaMG_comp10853_c0_seq1
432bp
FPKM:0.68 TPM:0.63
425 A_BomaMG_comp108547_c0_seq1
881bp
PREDICTED:_uncharacterized_protein_LOC101742185_isoform_X2_[Bombyx_mori]
FPKM:3.44 TPM:3.18
426 A_BomaMG_comp10854_c0_seq1
2754bp
PREDICTED:_LOW_QUALITY_PROTEIN:_integrator_complex_subunit_8_[Bombyx_mori]
GO:0005634 C nucleus
FPKM:3.01 TPM:2.79
427 A_BomaMG_comp108559_c0_seq1
225bp
PREDICTED:_apoptosis-inducing_factor_1,_mitochondrial-like_[Bombyx_mori]
GO:0002931 P response to ischemia
GO:0003677 F DNA binding
GO:0004174 F electron-transferring-flavoprotein dehydrogenase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005743 C mitochondrial inner membrane
GO:0005758 C mitochondrial intermembrane space
GO:0005829 C cytosol
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006979 P response to oxidative stress
GO:0008637 P apoptotic mitochondrial changes
GO:0009636 P response to toxic substance
GO:0010942 P positive regulation of cell death
GO:0016020 C membrane
GO:0016174 F NAD(P)H oxidase H2O2-forming activity
GO:0016491 F oxidoreductase activity
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0030182 P neuron differentiation
GO:0032981 P mitochondrial respiratory chain complex I assembly
GO:0043065 P positive regulation of apoptotic process
GO:0043525 P positive regulation of neuron apoptotic process
GO:0045454 P cell redox homeostasis
GO:0046983 F protein dimerization activity
GO:0048471 C perinuclear region of cytoplasm
GO:0050660 F flavin adenine dinucleotide binding
GO:0051402 P neuron apoptotic process
GO:0055114 P obsolete oxidation-reduction process
GO:0070059 P intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress
GO:0070301 P cellular response to hydrogen peroxide
GO:0071392 P cellular response to estradiol stimulus
GO:0071732 P cellular response to nitric oxide
GO:0071949 F FAD binding
GO:0090650 P cellular response to oxygen-glucose deprivation
GO:1902065 P response to L-glutamate
GO:1902510 P regulation of apoptotic DNA fragmentation
GO:1904045 P cellular response to aldosterone
FPKM:11.97 TPM:11.08
428 A_BomaMG_comp10856_c0_seq1
2663bp
PREDICTED:_uncharacterized_protein_LOC106136994_[Amyelois_transitella]
GO:0046872 F metal ion binding
FPKM:2.64 TPM:2.45
429 A_BomaMG_comp108570_c0_seq1
499bp
PREDICTED:_receptor-like_protein_kinase_BRI1-like_3_[Bombyx_mori]
FPKM:2.88 TPM:2.67
430 A_BomaMG_comp10857_c0_seq1
1913bp
PREDICTED:_integrin_alpha-PS2_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007160 P cell-matrix adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0007298 P border follicle cell migration
GO:0007411 P axon guidance
GO:0007414 P axonal defasciculation
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007494 P midgut development
GO:0007608 P sensory perception of smell
GO:0008305 C integrin complex
GO:0008360 P regulation of cell shape
GO:0009925 C basal plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016203 P muscle attachment
GO:0016324 C apical plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016337 P cell-cell adhesion
GO:0016477 P cell migration
GO:0021551 P central nervous system morphogenesis
GO:0030239 P myofibril assembly
GO:0033627 P cell adhesion mediated by integrin
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0035099 P hemocyte migration
GO:0035160 P maintenance of epithelial integrity, open tracheal system
GO:0042383 C sarcolemma
GO:0045185 P maintenance of protein location
GO:0045214 P sarcomere organization
GO:0046982 F protein heterodimerization activity
GO:0050839 F cell adhesion molecule binding
GO:0050840 F extracellular matrix binding
GO:0050896 P response to stimulus
GO:0051492 P regulation of stress fiber assembly
GO:1990430 F extracellular matrix protein binding
FPKM:1.15 TPM:1.07
431 A_BomaMG_comp10857_c0_seq2
1979bp
PREDICTED:_integrin_alpha-PS2_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007160 P cell-matrix adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0007298 P border follicle cell migration
GO:0007411 P axon guidance
GO:0007414 P axonal defasciculation
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007494 P midgut development
GO:0007608 P sensory perception of smell
GO:0008305 C integrin complex
GO:0008360 P regulation of cell shape
GO:0009925 C basal plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016203 P muscle attachment
GO:0016324 C apical plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016337 P cell-cell adhesion
GO:0016477 P cell migration
GO:0021551 P central nervous system morphogenesis
GO:0030239 P myofibril assembly
GO:0033627 P cell adhesion mediated by integrin
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0035099 P hemocyte migration
GO:0035160 P maintenance of epithelial integrity, open tracheal system
GO:0042383 C sarcolemma
GO:0045185 P maintenance of protein location
GO:0045214 P sarcomere organization
GO:0046982 F protein heterodimerization activity
GO:0050839 F cell adhesion molecule binding
GO:0050840 F extracellular matrix binding
GO:0050896 P response to stimulus
GO:0051492 P regulation of stress fiber assembly
GO:1990430 F extracellular matrix protein binding
FPKM:1.90 TPM:1.76
432 A_BomaMG_comp108580_c0_seq1
989bp
FPKM:1.93 TPM:1.79
433 A_BomaMG_comp108588_c0_seq1
430bp
FPKM:3.96 TPM:3.66
434 A_BomaMG_comp108591_c0_seq1
1633bp
PREDICTED:_inactive_hydroxysteroid_dehydrogenase-like_protein_1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.75 TPM:2.55
435 A_BomaMG_comp108597_c0_seq1
318bp
PREDICTED:_rho_GTPase-activating_protein_26_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005925 C focal adhesion
GO:0007165 P signal transduction
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
FPKM:1.97 TPM:1.83
436 A_BomaMG_comp1085_c0_seq1
499bp
FPKM:1.07 TPM:0.99
437 A_BomaMG_comp10862_c0_seq1
745bp
PREDICTED:_histone_acetyltransferase_KAT2B-like,_partial_[Amyelois_transitella]
GO:0000123 C histone acetyltransferase complex
GO:0000125 C SAGA complex
GO:0000776 C kinetochore
GO:0000790 C chromatin
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003682 F chromatin binding
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0004468 F lysine N-acetyltransferase activity, acting on acetyl phosphate as donor
GO:0004861 F cyclin-dependent protein serine/threonine kinase inhibitor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005829 C cytosol
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006473 P protein acetylation
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0007219 P Notch signaling pathway
GO:0007613 P memory
GO:0008080 F N-acetyltransferase activity
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010835 P regulation of protein ADP-ribosylation
GO:0010976 P positive regulation of neuron projection development
GO:0016032 P viral process
GO:0016407 F acetyltransferase activity
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018076 P N-terminal peptidyl-lysine acetylation
GO:0018393 P internal peptidyl-lysine acetylation
GO:0018394 P peptidyl-lysine acetylation
GO:0019901 F protein kinase binding
GO:0031672 C A band
GO:0031674 C I band
GO:0032403 F protein-containing complex binding
GO:0032869 P cellular response to insulin stimulus
GO:0034599 P cellular response to oxidative stress
GO:0035035 F histone acetyltransferase binding
GO:0035563 P positive regulation of chromatin binding
GO:0035948 P obsolete positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter
GO:0042641 C actomyosin
GO:0042826 F histone deacetylase binding
GO:0043966 P histone H3 acetylation
GO:0043970 P histone H3-K9 acetylation
GO:0045736 P negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045909 P vasodilation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048511 P rhythmic process
GO:0071374 P cellular response to parathyroid hormone stimulus
GO:0071442 P positive regulation of histone H3-K14 acetylation
GO:2000617 P positive regulation of histone H3-K9 acetylation
FPKM:0.84 TPM:0.78
438 A_BomaMG_comp10862_c0_seq2
863bp
Histone_acetyltransferase_KAT2A_[Papilio_xuthus]
GO:0000123 C histone acetyltransferase complex
GO:0000125 C SAGA complex
GO:0000776 C kinetochore
GO:0000790 C chromatin
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003682 F chromatin binding
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0004468 F lysine N-acetyltransferase activity, acting on acetyl phosphate as donor
GO:0004861 F cyclin-dependent protein serine/threonine kinase inhibitor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005829 C cytosol
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006473 P protein acetylation
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0007219 P Notch signaling pathway
GO:0007613 P memory
GO:0008080 F N-acetyltransferase activity
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010835 P regulation of protein ADP-ribosylation
GO:0010976 P positive regulation of neuron projection development
GO:0016032 P viral process
GO:0016407 F acetyltransferase activity
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018076 P N-terminal peptidyl-lysine acetylation
GO:0018393 P internal peptidyl-lysine acetylation
GO:0018394 P peptidyl-lysine acetylation
GO:0019901 F protein kinase binding
GO:0031672 C A band
GO:0031674 C I band
GO:0032403 F protein-containing complex binding
GO:0032869 P cellular response to insulin stimulus
GO:0034599 P cellular response to oxidative stress
GO:0035035 F histone acetyltransferase binding
GO:0035563 P positive regulation of chromatin binding
GO:0035948 P obsolete positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter
GO:0042641 C actomyosin
GO:0042826 F histone deacetylase binding
GO:0043966 P histone H3 acetylation
GO:0043970 P histone H3-K9 acetylation
GO:0045736 P negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045909 P vasodilation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048511 P rhythmic process
GO:0071374 P cellular response to parathyroid hormone stimulus
GO:0071442 P positive regulation of histone H3-K14 acetylation
GO:2000617 P positive regulation of histone H3-K9 acetylation
FPKM:2.54 TPM:2.35
439 A_BomaMG_comp108636_c0_seq1
252bp
PREDICTED:_active_breakpoint_cluster_region-related_protein_isoform_X1_[Bombyx_mori]
FPKM:2.72 TPM:2.52
440 A_BomaMG_comp10863_c0_seq1
286bp
FPKM:2.55 TPM:2.36
441 A_BomaMG_comp10864_c0_seq1
1694bp
PREDICTED:_LIM_domain_only_protein_3-like_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:2.57 TPM:2.38
442 A_BomaMG_comp108650_c0_seq1
640bp
PREDICTED:_protein_phosphatase_1A-like_[Ovis_aries]
FPKM:3.55 TPM:3.28
443 A_BomaMG_comp10865_c0_seq1
451bp
FPKM:3.65 TPM:3.38
444 A_BomaMG_comp10866_c0_seq1
327bp
PREDICTED:_myb-like_protein_J_[Bombyx_mori]
FPKM:0.93 TPM:0.86
445 A_BomaMG_comp108673_c0_seq1
768bp
PREDICTED:_importin-13_[Amyelois_transitella]
FPKM:3.75 TPM:3.48
446 A_BomaMG_comp108679_c0_seq1
919bp
FPKM:3.03 TPM:2.81
447 A_BomaMG_comp10868_c0_seq1
1669bp
PREDICTED:_Bloom_syndrome_protein_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000403 F Y-form DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0000733 P obsolete DNA strand renaturation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009378 F four-way junction helicase activity
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043140 F 3'-5' DNA helicase activity
GO:0044237 P cellular metabolic process
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
FPKM:3.46 TPM:3.20
448 A_BomaMG_comp10869_c0_seq1
1592bp
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_3-like_[Amyelois_transitella]
GO:0000278 P mitotic cell cycle
GO:0000790 C chromatin
GO:0004843 F thiol-dependent deubiquitinase
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0031647 P regulation of protein stability
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
FPKM:3.05 TPM:2.82
449 A_BomaMG_comp108704_c0_seq1
467bp
FPKM:1.54 TPM:1.43
450 A_BomaMG_comp10870_c0_seq1
229bp
hypothetical_protein_TSTA_040370_[Talaromyces_stipitatus_ATCC_10500]
FPKM:0.62 TPM:0.58
previous next from show/39865

- SilkBase 1999-2023 -