SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
481 A_BomaMG_comp108964_c0_seq1
1399bp
PREDICTED:_actin_cytoskeleton-regulatory_complex_protein_pan1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
FPKM:2.53 TPM:2.34
482 A_BomaMG_comp10896_c0_seq1
814bp
FPKM:2.73 TPM:2.53
483 A_BomaMG_comp108974_c0_seq1
485bp
FPKM:3.35 TPM:3.10
484 A_BomaMG_comp10897_c0_seq1
1474bp
PREDICTED:_protein_spire_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030029 P actin filament-based process
GO:0030036 P actin cytoskeleton organization
GO:0030659 C cytoplasmic vesicle membrane
GO:0030717 P oocyte karyosome formation
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048471 C perinuclear region of cytoplasm
GO:0048477 P oogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0051639 P actin filament network formation
FPKM:2.64 TPM:2.45
485 A_BomaMG_comp108980_c0_seq1
291bp
PREDICTED:_LOW_QUALITY_PROTEIN:_tuberin_[Bombyx_mori]
FPKM:7.01 TPM:6.49
486 A_BomaMG_comp108984_c0_seq1
279bp
PREDICTED:_microtubule-associated_protein_futsch_[Bombyx_mori]
FPKM:7.13 TPM:6.61
487 A_BomaMG_comp108987_c0_seq1
277bp
endonuclease_[Sinorhizobium_medicae]
FPKM:6.93 TPM:6.41
488 A_BomaMG_comp10898_c0_seq1
1320bp
Nuclear_factor_interleukin-3-regulated_protein_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006955 P immune response
GO:0007507 P heart development
GO:0007623 P circadian rhythm
GO:0043565 F sequence-specific DNA binding
GO:0048511 P rhythmic process
GO:0061515 P myeloid cell development
FPKM:2.53 TPM:2.34
489 A_BomaMG_comp10899_c0_seq1
959bp
PREDICTED:_enhancer_of_mRNA-decapping_protein_3,_partial_[Bombyx_mori]
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0031087 P deadenylation-independent decapping of nuclear-transcribed mRNA
GO:0033962 P P-body assembly
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:1990174 F phosphodiesterase decapping endonuclease activity
FPKM:2.57 TPM:2.38
490 A_BomaMG_comp1089_c0_seq1
260bp
PREDICTED:_uncharacterized_protein_LOC101741863_[Bombyx_mori]
FPKM:1.65 TPM:1.53
491 A_BomaMG_comp10900_c0_seq1
298bp
FPKM:4.89 TPM:4.52
492 A_BomaMG_comp109017_c0_seq1
696bp
PREDICTED:_eukaryotic_translation_initiation_factor_4E_transporter-like_[Bombyx_mori]
GO:0000932 C P-body
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016605 C PML body
GO:0016607 C nuclear speck
GO:0017148 P negative regulation of translation
GO:0019827 P stem cell population maintenance
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045665 P negative regulation of neuron differentiation
FPKM:2.83 TPM:2.62
493 A_BomaMG_comp10901_c0_seq1
1113bp
PREDICTED:_sesquipedalian-1_[Papilio_machaon]
GO:0001881 P receptor recycling
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0007032 P endosome organization
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042803 F protein homodimerization activity
GO:0055037 C recycling endosome
FPKM:3.31 TPM:3.06
494 A_BomaMG_comp10902_c0_seq1
781bp
PREDICTED:_retinoblastoma-like_protein_1_isoform_X1_[Papilio_xuthus]
FPKM:2.77 TPM:2.56
495 A_BomaMG_comp109040_c0_seq1
556bp
FPKM:3.35 TPM:3.10
496 A_BomaMG_comp109049_c0_seq1
1326bp
PREDICTED:_transformation/transcription_domain-associated_protein_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0000812 C Swr1 complex
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
FPKM:2.39 TPM:2.22
497 A_BomaMG_comp10904_c0_seq1
969bp
Uncharacterized_protein_OBRU01_17125_[Operophtera_brumata]
FPKM:2.79 TPM:2.59
498 A_BomaMG_comp10905_c0_seq1
2578bp
PREDICTED:_ribonuclease_Z,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0072684 P mitochondrial tRNA 3'-trailer cleavage, endonucleolytic
FPKM:2.71 TPM:2.51
499 A_BomaMG_comp109063_c0_seq1
385bp
FPKM:3.59 TPM:3.33
500 A_BomaMG_comp10906_c0_seq1
1196bp
Erg28-domain_containing_protein_[Bombyx_mori]
FPKM:2.20 TPM:2.04
501 A_BomaMG_comp109071_c0_seq1
399bp
FPKM:1.87 TPM:1.73
502 A_BomaMG_comp10907_c0_seq1
965bp
PREDICTED:_E3_ubiquitin-protein_ligase_MARCH8-like_[Bombyx_mori]
GO:0002376 P immune system process
GO:0004842 F ubiquitin-protein transferase activity
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
503 A_BomaMG_comp10907_c0_seq2
1003bp
PREDICTED:_E3_ubiquitin-protein_ligase_MARCH8-like_[Bombyx_mori]
GO:0002376 P immune system process
GO:0004842 F ubiquitin-protein transferase activity
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0046872 F metal ion binding
FPKM:3.17 TPM:2.94
504 A_BomaMG_comp10909_c0_seq1
3157bp
PREDICTED:_uncharacterized_protein_LOC101742265_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0016020 C membrane
FPKM:2.63 TPM:2.43
505 A_BomaMG_comp10910_c0_seq1
585bp
hypothetical_protein_V494_08104,_partial_[Pseudogymnoascus_sp._VKM_F-4513_(FW-928)]
FPKM:3.19 TPM:2.95
506 A_BomaMG_comp10911_c0_seq1
807bp
PREDICTED:_pyridoxal-dependent_decarboxylase_domain-containing_protein_1_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005794 C Golgi apparatus
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0019752 P carboxylic acid metabolic process
GO:0030170 F pyridoxal phosphate binding
GO:0043231 C intracellular membrane-bounded organelle
FPKM:4.76 TPM:4.41
507 A_BomaMG_comp109124_c0_seq1
227bp
FPKM:4.50 TPM:4.17
508 A_BomaMG_comp109129_c0_seq1
202bp
FPKM:4.13 TPM:3.82
509 A_BomaMG_comp10912_c0_seq1
991bp
PREDICTED:_protein_RRNAD1-like_[Bombyx_mori]
GO:0000154 P rRNA modification
GO:0000179 F rRNA (adenine-N6,N6-)-dimethyltransferase activity
GO:0008649 F rRNA methyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031167 P rRNA methylation
GO:0032259 P methylation
FPKM:2.59 TPM:2.40
510 A_BomaMG_comp10913_c0_seq1
797bp
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_34-like_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:3.14 TPM:2.90
previous next from show/39865

- SilkBase 1999-2023 -