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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4171 A_BomaMG_comp14164_c0_seq1
340bp
hypothetical_protein_KGM_21374_[Danaus_plexippus]
FPKM:2.77 TPM:2.57
4172 A_BomaMG_comp14165_c0_seq1
842bp
PREDICTED:_PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN2_isoform_X2_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016787 F hydrolase activity
GO:0031251 C PAN complex
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:1.54 TPM:1.42
4173 A_BomaMG_comp14165_c1_seq1
968bp
PREDICTED:_uncharacterized_protein_LOC106129230_[Amyelois_transitella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000291 P nuclear-transcribed mRNA catabolic process, exonucleolytic
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016787 F hydrolase activity
GO:0031251 C PAN complex
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:2.24 TPM:2.07
4174 A_BomaMG_comp14166_c0_seq1
946bp
methoprene-tolerant_homolog-2_[Bombyx_mori]
GO:0000976 F transcription cis-regulatory region binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007283 P spermatogenesis
GO:0016605 C PML body
GO:0032007 P negative regulation of TOR signaling
GO:0032922 P circadian regulation of gene expression
GO:0033391 C chromatoid body
GO:0042634 P regulation of hair cycle
GO:0042753 P positive regulation of circadian rhythm
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043565 F sequence-specific DNA binding
GO:0045599 P negative regulation of fat cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046983 F protein dimerization activity
GO:0048511 P rhythmic process
GO:0050767 P regulation of neurogenesis
GO:0050796 P regulation of insulin secretion
GO:0051726 P regulation of cell cycle
GO:0070888 F E-box binding
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:0090403 P oxidative stress-induced premature senescence
GO:2000074 P regulation of type B pancreatic cell development
GO:2000323 P negative regulation of glucocorticoid receptor signaling pathway
GO:2000772 P regulation of cellular senescence
GO:2001016 P positive regulation of skeletal muscle cell differentiation
FPKM:1.37 TPM:1.27
4175 A_BomaMG_comp14167_c0_seq1
249bp
PREDICTED:_receptor-mediated_endocytosis_protein_6_homolog_[Bombyx_mori]
FPKM:1.88 TPM:1.75
4176 A_BomaMG_comp14167_c1_seq1
283bp
PREDICTED:_receptor-mediated_endocytosis_protein_6_homolog_[Bombyx_mori]
FPKM:3.27 TPM:3.03
4177 A_BomaMG_comp141689_c0_seq1
1056bp
FPKM:2.40 TPM:2.22
4178 A_BomaMG_comp14168_c0_seq1
366bp
PREDICTED:_tubulin_beta_chain-like_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
FPKM:0.73 TPM:0.68
4179 A_BomaMG_comp14168_c1_seq1
422bp
GD15076_[Drosophila_simulans]
GO:0000166 F nucleotide binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
FPKM:1.69 TPM:1.57
4180 A_BomaMG_comp14169_c0_seq1
341bp
FPKM:2.12 TPM:1.96
4181 A_BomaMG_comp1416_c0_seq1
202bp
FPKM:2.06 TPM:1.91
4182 A_BomaMG_comp1416_c1_seq1
208bp
hypothetical_protein_TOPH_00059_[Tolypocladium_ophioglossoides_CBS_100239]
FPKM:1.82 TPM:1.68
4183 A_BomaMG_comp14170_c0_seq1
255bp
hypothetical_protein_[Porphyromonas_sp._COT-108_OH2963]
FPKM:3.07 TPM:2.84
4184 A_BomaMG_comp14171_c0_seq1
1286bp
hypothetical_protein_KGM_06855_[Danaus_plexippus]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:1.96 TPM:1.82
4185 A_BomaMG_comp14171_c1_seq1
775bp
PREDICTED:_facilitated_trehalose_transporter_Tret1-like_isoform_X2_[Papilio_machaon]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:1.77 TPM:1.64
4186 A_BomaMG_comp14172_c0_seq1
856bp
FPKM:1.66 TPM:1.53
4187 A_BomaMG_comp141730_c0_seq1
911bp
PREDICTED:_PHD_finger_protein_12_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001106 F transcription corepressor activity
GO:0001222 F transcription corepressor binding
GO:0003682 F chromatin binding
GO:0003712 F transcription coregulator activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016580 C Sin3 complex
GO:0017053 C transcription repressor complex
GO:0035091 F phosphatidylinositol binding
GO:0042393 F histone binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070822 C Sin3-type complex
FPKM:1.81 TPM:1.68
4188 A_BomaMG_comp14173_c0_seq1
472bp
Snf7_family_protein_[Marssonina_brunnea_f._sp._'multigermtubi'_MB_m1]
FPKM:1.40 TPM:1.30
4189 A_BomaMG_comp14174_c0_seq1
622bp
FPKM:1.15 TPM:1.07
4190 A_BomaMG_comp14175_c0_seq1
505bp
FPKM:1.89 TPM:1.75
4191 A_BomaMG_comp14177_c0_seq1
578bp
FPKM:1.79 TPM:1.66
4192 A_BomaMG_comp14178_c0_seq1
573bp
PREDICTED:_serine/arginine_repetitive_matrix_protein_1-like_[Bombyx_mori]
FPKM:3.29 TPM:3.05
4193 A_BomaMG_comp14178_c1_seq1
388bp
PREDICTED:_uncharacterized_protein_LOC105841441_[Bombyx_mori]
FPKM:3.12 TPM:2.89
4194 A_BomaMG_comp14179_c0_seq1
278bp
FPKM:2.40 TPM:2.22
4195 A_BomaMG_comp14179_c1_seq1
388bp
conserved_hypothetical_protein_[Pyrenophora_tritici-repentis_Pt-1C-BFP]
FPKM:1.31 TPM:1.22
4196 A_BomaMG_comp14180_c0_seq1
623bp
transient_receptor_potential_cation_channel_protein_painless_[Bombyx_mori]
GO:0005216 F ion channel activity
GO:0005227 F calcium activated cation channel activity
GO:0005262 F calcium channel activity
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0007620 P copulation
GO:0007631 P feeding behavior
GO:0007638 P mechanosensory behavior
GO:0008016 P regulation of heart contraction
GO:0008049 P male courtship behavior
GO:0009408 P response to heat
GO:0009612 P response to mechanical stimulus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019233 P sensory perception of pain
GO:0034704 C calcium channel complex
GO:0042048 P olfactory behavior
GO:0043052 P thermotaxis
GO:0045924 P regulation of female receptivity
GO:0048060 P negative gravitaxis
GO:0048266 P behavioral response to pain
GO:0050896 P response to stimulus
GO:0050960 P detection of temperature stimulus involved in thermoception
GO:0050965 P detection of temperature stimulus involved in sensory perception of pain
GO:0050966 P detection of mechanical stimulus involved in sensory perception of pain
GO:0050974 P detection of mechanical stimulus involved in sensory perception
GO:0055085 P transmembrane transport
GO:0070588 P calcium ion transmembrane transport
FPKM:1.30 TPM:1.21
4197 A_BomaMG_comp14181_c0_seq1
638bp
1-phosphatidylinositol-4,5-bisphosphate_phosphodiesterase_beta-4_[Bombyx_mori]
GO:0001580 P detection of chemical stimulus involved in sensory perception of bitter taste
GO:0002385 P mucosal immune response
GO:0004435 F phosphatidylinositol phospholipase C activity
GO:0004629 F phospholipase C activity
GO:0004871 F obsolete signal transducer activity
GO:0005096 F GTPase activator activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0006629 P lipid metabolic process
GO:0006644 P phospholipid metabolic process
GO:0006651 P diacylglycerol biosynthetic process
GO:0007165 P signal transduction
GO:0007601 P visual perception
GO:0007602 P phototransduction
GO:0007608 P sensory perception of smell
GO:0008081 F phosphoric diester hydrolase activity
GO:0008344 P adult locomotory behavior
GO:0008377 P light-induced release of internally sequestered calcium ion
GO:0008654 P phospholipid biosynthetic process
GO:0009649 P entrainment of circadian clock
GO:0016027 C inaD signaling complex
GO:0016028 C rhabdomere
GO:0016042 P lipid catabolic process
GO:0016056 P rhodopsin mediated signaling pathway
GO:0016059 P deactivation of rhodopsin mediated signaling
GO:0016787 F hydrolase activity
GO:0019722 P calcium-mediated signaling
GO:0035556 P intracellular signal transduction
GO:0043052 P thermotaxis
GO:0043153 P entrainment of circadian clock by photoperiod
GO:0043547 P positive regulation of GTPase activity
GO:0045494 P photoreceptor cell maintenance
GO:0046488 P phosphatidylinositol metabolic process
GO:0046673 P negative regulation of compound eye retinal cell programmed cell death
GO:0050896 P response to stimulus
GO:0051482 P positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway
GO:2000370 P positive regulation of clathrin-dependent endocytosis
FPKM:1.48 TPM:1.37
4198 A_BomaMG_comp141826_c0_seq1
584bp
FPKM:1.85 TPM:1.72
4199 A_BomaMG_comp14182_c0_seq1
522bp
PREDICTED:_tyrosine-protein_phosphatase_69D_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004728 F obsolete signal transducer, downstream of receptor, with protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0007155 P cell adhesion
GO:0007411 P axon guidance
GO:0007414 P axonal defasciculation
GO:0007415 P defasciculation of motor neuron axon
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0023014 P signal transduction
GO:0030424 C axon
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0046331 P lateral inhibition
GO:0048813 P dendrite morphogenesis
GO:0097155 P fasciculation of sensory neuron axon
FPKM:3.09 TPM:2.86
4200 A_BomaMG_comp141834_c0_seq1
381bp
FPKM:1.70 TPM:1.57
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