SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp14165_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN2_isoform_X2_[Bombyx_mori]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016787 F hydrolase activity
GO:0031251 C PAN complex
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:1.54 TPM:1.42
ORF Entry
Sequence
(Nucleotide)
GCTGCTTCGGGCGACGGACACGTCAGTTTGTTACACGTGAACGCACCTGAAGAAAGGCAG
TCAATTTTTAAGGTAGAGACGCACAGCTCACAGTGCAATGTGATGGACGTTGCGTCGACG
AGTCAAGCCCTCGCTTTCGGTGACCAATCAGGACATTTAAATCTTTTCTCACCGACGCAG
AATCACGAACCTGTATACAATAATTTTTCAAGGTCAACAGAGTTCGCGGATCCAGTGGAA
GGTCTACCTTACGTTCGGTTCAGCGACACCAGGTTCCAGTACTCGTCCGTGCCACTACCT
CAGCTGGCGAGCGGCGGGAAATGGTTCAATGAATTGCCACCGGAATTCTTTAGGAAAGTG
TATAGAAAACCAAAGCCGGTCGATCCTGAAGTTTTGAAATCGATGAAAATGCAAGGTCCA
ATAGGATACGCGCCTAATCCGAAAACTTTTAGAAGGAATCAGATGCCGTACCTTGAAGAA
TCGTTAGAAGAAATGAGTATATCAAAAATAAACGGAAATAAAGTAATAATGCAGCCAATA
CCGAAACATTATCAGAAGCTCGACATACGATACAATAAACACGGTCCGAACGAAGAATTA
GAGAGTTTCAATAAAACAGGTCAGCCCGGACTGGAGGCTACATTACCGAATTCATACTGC
AATGCCATGTTACAGGTTTTGTACTACACGCCGCCGGTCAAAGCCACGTTGCTAGCACAC
ACGTGCGCCAAAGAGTTCTGCTTGAGCTGTGAATTAGGTTTTCTATTTCGCATGCTGGAC
ACGTCTGGGGGCACGCCTTGTCAGGCCACAAACTTCCTACGCGCGTTTCGTACGGTCCCC
GA
(842 bp)

- SilkBase 1999-2023 -