SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4201 A_BomaMG_comp14183_c0_seq1
428bp
PREDICTED:_D-glucuronyl_C5-epimerase_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0015012 P heparan sulfate proteoglycan biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016853 F isomerase activity
GO:0016857 F racemase and epimerase activity, acting on carbohydrates and derivatives
GO:0030210 P heparin biosynthetic process
GO:0047464 F heparosan-N-sulfate-glucuronate 5-epimerase activity
GO:0050379 F UDP-glucuronate 5'-epimerase activity
FPKM:2.89 TPM:2.67
4202 A_BomaMG_comp14183_c1_seq1
541bp
FPKM:1.23 TPM:1.13
4203 A_BomaMG_comp14184_c0_seq1
2000bp
poly(A)-specific_ribonuclease_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006402 P mRNA catabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0051321 P meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:4.54 TPM:4.20
4204 A_BomaMG_comp14184_c0_seq2
1969bp
poly(A)-specific_ribonuclease_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006402 P mRNA catabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0051321 P meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:1.29 TPM:1.19
4205 A_BomaMG_comp14185_c0_seq1
338bp
hypothetical_protein_KGM_05397_[Danaus_plexippus]
FPKM:2.16 TPM:2.00
4206 A_BomaMG_comp14186_c0_seq1
537bp
PREDICTED:_uncharacterized_protein_LOC105385369_[Plutella_xylostella]
FPKM:1.72 TPM:1.59
4207 A_BomaMG_comp14187_c0_seq1
1429bp
PREDICTED:_peregrin-like_[Papilio_machaon]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0043966 P histone H3 acetylation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070776 C MOZ/MORF histone acetyltransferase complex
GO:1901796 P regulation of signal transduction by p53 class mediator
FPKM:1.57 TPM:1.46
4208 A_BomaMG_comp14187_c1_seq1
700bp
PREDICTED:_protein_lin-49,_partial_[Amyelois_transitella]
FPKM:1.76 TPM:1.63
4209 A_BomaMG_comp141889_c0_seq1
792bp
FPKM:2.44 TPM:2.26
4210 A_BomaMG_comp14188_c0_seq1
245bp
hypothetical_protein_LR48_Vigan09g216900_[Vigna_angularis]
FPKM:2.48 TPM:2.30
4211 A_BomaMG_comp141899_c0_seq1
839bp
PREDICTED:_uncharacterized_protein_LOC106134389_[Amyelois_transitella]
GO:0000209 P protein polyubiquitination
GO:0001824 P blastocyst development
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:2001243 P negative regulation of intrinsic apoptotic signaling pathway
FPKM:1.60 TPM:1.48
4212 A_BomaMG_comp14189_c0_seq1
321bp
FPKM:0.97 TPM:0.89
4213 A_BomaMG_comp141903_c0_seq1
520bp
MutS2_family_protein_[Clostridiales_bacterium_KA00274]
FPKM:1.60 TPM:1.48
4214 A_BomaMG_comp141905_c0_seq1
306bp
FPKM:0.27 TPM:0.25
4215 A_BomaMG_comp141920_c0_seq1
679bp
FPKM:1.95 TPM:1.81
4216 A_BomaMG_comp14192_c0_seq1
386bp
two-component_sensor_histidine_kinase_[Bacillus_gaemokensis]
FPKM:2.49 TPM:2.30
4217 A_BomaMG_comp14192_c1_seq1
244bp
FPKM:1.01 TPM:0.93
4218 A_BomaMG_comp14193_c0_seq1
263bp
PREDICTED:_tyrosine-protein_phosphatase_10D-like_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004728 F obsolete signal transducer, downstream of receptor, with protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007424 P open tracheal system development
GO:0007616 P long-term memory
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045177 C apical part of cell
FPKM:2.80 TPM:2.59
4219 A_BomaMG_comp14193_c0_seq2
359bp
PREDICTED:_tyrosine-protein_phosphatase_10D-like_[Bombyx_mori]
FPKM:1.33 TPM:1.24
4220 A_BomaMG_comp14194_c0_seq1
812bp
FPKM:3.97 TPM:3.68
4221 A_BomaMG_comp14195_c0_seq1
403bp
FPKM:1.99 TPM:1.84
4222 A_BomaMG_comp14196_c0_seq1
428bp
FPKM:0.83 TPM:0.76
4223 A_BomaMG_comp14197_c0_seq1
743bp
FPKM:1.33 TPM:1.23
4224 A_BomaMG_comp14197_c1_seq1
597bp
FPKM:1.88 TPM:1.74
4225 A_BomaMG_comp14199_c0_seq1
364bp
FPKM:2.23 TPM:2.06
4226 A_BomaMG_comp142008_c0_seq1
329bp
cytochrome_9A20_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0035220 P wing disc development
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.75 TPM:2.54
4227 A_BomaMG_comp14200_c0_seq1
237bp
FPKM:0.00 TPM:0.00
4228 A_BomaMG_comp14201_c0_seq1
201bp
PREDICTED:_uncharacterized_protein_LOC105842522_[Bombyx_mori]
FPKM:2.11 TPM:1.96
4229 A_BomaMG_comp14201_c0_seq2
259bp
PREDICTED:_uncharacterized_protein_LOC105842522_[Bombyx_mori]
FPKM:1.67 TPM:1.55
4230 A_BomaMG_comp14202_c0_seq1
1223bp
PREDICTED:_uncharacterized_protein_LOC101743023_[Bombyx_mori]
FPKM:1.23 TPM:1.14
previous next from show/39865

- SilkBase 1999-2023 -