SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3241 A_BomaMG_comp1334_c0_seq1
231bp
PREDICTED:_DNA-directed_RNA_polymerase,_mitochondrial_[Plutella_xylostella]
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006390 P mitochondrial transcription
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
FPKM:3.63 TPM:3.36
3242 A_BomaMG_comp13350_c0_seq1
2548bp
hypothetical_protein_KGM_15573_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
FPKM:7.02 TPM:6.50
3243 A_BomaMG_comp13353_c0_seq1
2082bp
PREDICTED:_LOW_QUALITY_PROTEIN:_rho_GDP-dissociation_inhibitor_1_[Bombyx_mori]
GO:0005094 F Rho GDP-dissociation inhibitor activity
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0043547 P positive regulation of GTPase activity
GO:0050790 P regulation of catalytic activity
GO:0071526 P semaphorin-plexin signaling pathway
FPKM:95.79 TPM:88.70
3244 A_BomaMG_comp13354_c0_seq1
1230bp
ischemia/reperfusion_inducible_protein_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0002949 P tRNA threonylcarbamoyladenosine modification
GO:0003725 F double-stranded RNA binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006450 P regulation of translational fidelity
GO:0016020 C membrane
GO:0016779 F nucleotidyltransferase activity
GO:0051051 P negative regulation of transport
FPKM:6.33 TPM:5.86
3245 A_BomaMG_comp13356_c0_seq1
239bp
hypothetical_protein_PVNG_03144_[Plasmodium_vivax_North_Korean]
FPKM:8.61 TPM:7.97
3246 A_BomaMG_comp133574_c0_seq1
358bp
FPKM:1.15 TPM:1.07
3247 A_BomaMG_comp1335_c0_seq1
290bp
PREDICTED:_G-protein_coupled_receptor_143_isoform_X1_[Cavia_porcellus]
FPKM:1.23 TPM:1.14
3248 A_BomaMG_comp1335_c1_seq1
322bp
allene_oxide_synthase_[Camellia_sinensis]
FPKM:1.68 TPM:1.56
3249 A_BomaMG_comp13361_c0_seq1
1935bp
PREDICTED:_myotubularin-related_protein_2_[Bombyx_mori]
GO:0002091 P negative regulation of receptor internalization
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005774 C vacuolar membrane
GO:0005829 C cytosol
GO:0006470 P protein dephosphorylation
GO:0006629 P lipid metabolic process
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0008021 C synaptic vesicle
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031642 P negative regulation of myelination
GO:0031901 C early endosome membrane
GO:0032288 P myelin assembly
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0042803 F protein homodimerization activity
GO:0043197 C dendritic spine
GO:0045806 P negative regulation of endocytosis
GO:0046488 P phosphatidylinositol metabolic process
GO:0046855 P inositol phosphate dephosphorylation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0048666 P neuron development
GO:0051262 P protein tetramerization
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
GO:0052866 F phosphatidylinositol phosphate phosphatase activity
GO:0070062 C extracellular exosome
GO:0090394 P negative regulation of excitatory postsynaptic potential
GO:0097060 C synaptic membrane
GO:0097062 P dendritic spine maintenance
GO:0097481 C postsynaptic density
GO:2000643 P positive regulation of early endosome to late endosome transport
GO:2000645 P negative regulation of receptor catabolic process
FPKM:6.07 TPM:5.62
3250 A_BomaMG_comp133627_c0_seq1
242bp
FPKM:0.52 TPM:0.48
3251 A_BomaMG_comp13363_c0_seq1
251bp
FPKM:1.84 TPM:1.70
3252 A_BomaMG_comp133643_c0_seq1
242bp
PREDICTED:_methyltransferase-like_protein_2_[Camelina_sativa]
FPKM:3.61 TPM:3.35
3253 A_BomaMG_comp13364_c0_seq1
2368bp
Conserved_oligomeric_Golgi_complex_subunit_5_[Operophtera_brumata]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0048219 P inter-Golgi cisterna vesicle-mediated transport
FPKM:6.91 TPM:6.40
3254 A_BomaMG_comp13366_c0_seq1
1112bp
PREDICTED:_protein_abrupt-like_[Papilio_polytes]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007275 P multicellular organism development
GO:0007458 P progression of morphogenetic furrow involved in compound eye morphogenesis
GO:0007552 P metamorphosis
GO:0007562 P eclosion
GO:0008219 P cell death
GO:0009608 P response to symbiont
GO:0010629 P negative regulation of gene expression
GO:0010906 P regulation of glucose metabolic process
GO:0030707 P ovarian follicle cell development
GO:0035070 P salivary gland histolysis
GO:0035071 P salivary gland cell autophagic cell death
GO:0035072 P ecdysone-mediated induction of salivary gland cell autophagic cell death
GO:0035075 P response to ecdysone
GO:0035193 P larval central nervous system remodeling
GO:0040034 P regulation of development, heterochronic
GO:0042332 P gravitaxis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0048747 P muscle cell development
GO:0048808 P male genitalia morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0071390 P cellular response to ecdysone
FPKM:0.55 TPM:0.51
3255 A_BomaMG_comp13366_c0_seq2
1228bp
PREDICTED:_transcription_factor_GAGA-like_[Papilio_xuthus]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007275 P multicellular organism development
GO:0007458 P progression of morphogenetic furrow involved in compound eye morphogenesis
GO:0007552 P metamorphosis
GO:0007562 P eclosion
GO:0008219 P cell death
GO:0009608 P response to symbiont
GO:0010629 P negative regulation of gene expression
GO:0010906 P regulation of glucose metabolic process
GO:0030707 P ovarian follicle cell development
GO:0035070 P salivary gland histolysis
GO:0035071 P salivary gland cell autophagic cell death
GO:0035072 P ecdysone-mediated induction of salivary gland cell autophagic cell death
GO:0035075 P response to ecdysone
GO:0035193 P larval central nervous system remodeling
GO:0040034 P regulation of development, heterochronic
GO:0042332 P gravitaxis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0048747 P muscle cell development
GO:0048808 P male genitalia morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0071390 P cellular response to ecdysone
FPKM:6.85 TPM:6.34
3256 A_BomaMG_comp133670_c0_seq1
538bp
hypothetical_protein_KGM_00385_[Danaus_plexippus]
FPKM:2.09 TPM:1.94
3257 A_BomaMG_comp133678_c0_seq1
391bp
Non-LTR_retrotransposon_CATS_[Operophtera_brumata]
FPKM:2.10 TPM:1.95
3258 A_BomaMG_comp13367_c0_seq1
266bp
FPKM:5.03 TPM:4.66
3259 A_BomaMG_comp133685_c0_seq1
795bp
FPKM:3.31 TPM:3.07
3260 A_BomaMG_comp133687_c0_seq1
683bp
FPKM:2.30 TPM:2.13
3261 A_BomaMG_comp13368_c0_seq1
1079bp
PREDICTED:_uncharacterized_protein_LOC106134731_[Amyelois_transitella]
FPKM:8.03 TPM:7.44
3262 A_BomaMG_comp13369_c0_seq1
2030bp
PREDICTED:_uncharacterized_protein_LOC106131099_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
FPKM:6.61 TPM:6.12
3263 A_BomaMG_comp1336_c0_seq1
357bp
putative_inositol_1,3,4-triphosphate_5/6_kinase_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016324 C apical plasma membrane
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0016853 F isomerase activity
GO:0021915 P neural tube development
GO:0032957 P inositol trisphosphate metabolic process
GO:0046872 F metal ion binding
GO:0047325 F inositol tetrakisphosphate 1-kinase activity
GO:0052725 F inositol-1,3,4-trisphosphate 6-kinase activity
GO:0052726 F inositol-1,3,4-trisphosphate 5-kinase activity
FPKM:1.35 TPM:1.25
3264 A_BomaMG_comp133710_c0_seq1
704bp
FPKM:1.69 TPM:1.56
3265 A_BomaMG_comp13371_c0_seq1
1222bp
FPKM:6.70 TPM:6.20
3266 A_BomaMG_comp13372_c0_seq1
782bp
PREDICTED:_protein-lysine_N-methyltransferase_mettl10_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016279 F protein-lysine N-methyltransferase activity
GO:0016740 F transferase activity
GO:0018022 P peptidyl-lysine methylation
GO:0032259 P methylation
FPKM:9.64 TPM:8.93
3267 A_BomaMG_comp13373_c0_seq1
1270bp
PREDICTED:_uncharacterized_protein_LOC101737750_[Bombyx_mori]
FPKM:5.78 TPM:5.35
3268 A_BomaMG_comp133747_c0_seq1
622bp
PREDICTED:_zinc_finger_protein_628_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003712 F transcription coregulator activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
FPKM:2.85 TPM:2.64
3269 A_BomaMG_comp13374_c0_seq1
340bp
PREDICTED:_transient_receptor_potential_cation_channel_trpm_isoform_X6_[Papilio_xuthus]
GO:0005216 F ion channel activity
GO:0005261 F cation channel activity
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007005 P mitochondrion organization
GO:0010960 P magnesium ion homeostasis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016049 P cell growth
GO:0034220 P ion transmembrane transport
GO:0034703 C cation channel complex
GO:0043052 P thermotaxis
GO:0046873 F metal ion transmembrane transporter activity
GO:0051262 P protein tetramerization
GO:0055069 P zinc ion homeostasis
GO:0055085 P transmembrane transport
GO:0070838 P metal ion transport
GO:0097682 F intracellular phosphatidylinositol-3,5-bisphosphate-sensitive cation channel activity
GO:0098655 P cation transmembrane transport
FPKM:4.00 TPM:3.70
3270 A_BomaMG_comp13374_c0_seq2
367bp
PREDICTED:_transient_receptor_potential_cation_channel_trpm_isoform_X2_[Bombyx_mori]
GO:0005216 F ion channel activity
GO:0005261 F cation channel activity
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007005 P mitochondrion organization
GO:0010960 P magnesium ion homeostasis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016049 P cell growth
GO:0034220 P ion transmembrane transport
GO:0034703 C cation channel complex
GO:0043052 P thermotaxis
GO:0046873 F metal ion transmembrane transporter activity
GO:0051262 P protein tetramerization
GO:0055069 P zinc ion homeostasis
GO:0055085 P transmembrane transport
GO:0070838 P metal ion transport
GO:0097682 F intracellular phosphatidylinositol-3,5-bisphosphate-sensitive cation channel activity
GO:0098655 P cation transmembrane transport
FPKM:10.27 TPM:9.51
previous next from show/39865

- SilkBase 1999-2023 -