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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3211 A_BomaMG_comp13327_c0_seq1
1333bp
PREDICTED:_cyclin-K_[Bombyx_mori]
GO:0000307 C cyclin-dependent protein kinase holoenzyme complex
GO:0001701 P in utero embryonic development
GO:0002944 C cyclin K-CDK12 complex
GO:0002945 C cyclin K-CDK13 complex
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0019901 F protein kinase binding
GO:0044828 P negative regulation by host of viral genome replication
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051301 P cell division
GO:0071157 P regulation of cell cycle
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
GO:2001165 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues
FPKM:6.85 TPM:6.34
3212 A_BomaMG_comp13329_c0_seq1
1590bp
extramacrochaetae_protein_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001191 F obsolete transcriptional repressor activity, RNA polymerase II transcription factor binding
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007286 P spermatid development
GO:0007391 P dorsal closure
GO:0007422 P peripheral nervous system development
GO:0007458 P progression of morphogenetic furrow involved in compound eye morphogenesis
GO:0007460 P R8 cell fate commitment
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007494 P midgut development
GO:0007530 P sex determination
GO:0007541 P sex determination, primary response to X:A ratio
GO:0008258 P head involution
GO:0008283 P cell population proliferation
GO:0008407 P chaeta morphogenesis
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0030381 P chorion-containing eggshell pattern formation
GO:0031987 P locomotion involved in locomotory behavior
GO:0042675 P compound eye cone cell differentiation
GO:0043392 P negative regulation of DNA binding
GO:0045466 P R7 cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046331 P lateral inhibition
GO:0046552 P photoreceptor cell fate commitment
GO:0046843 P dorsal appendage formation
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048056 P R3/R4 cell differentiation
GO:0048854 P brain morphogenesis
FPKM:29.44 TPM:27.26
3213 A_BomaMG_comp1332_c0_seq1
256bp
serine_protease_easter_precursor_[Papilio_xuthus]
FPKM:1.30 TPM:1.20
3214 A_BomaMG_comp133303_c0_seq1
455bp
PREDICTED:_PAX-interacting_protein_1_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
FPKM:2.73 TPM:2.53
3215 A_BomaMG_comp13330_c0_seq1
1260bp
AF078161_1_lacunin_[Manduca_sexta]
GO:0004222 F metalloendopeptidase activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030198 P extracellular matrix organization
GO:0030414 F peptidase inhibitor activity
GO:0031012 C extracellular matrix
FPKM:3.45 TPM:3.20
3216 A_BomaMG_comp13330_c0_seq2
1770bp
PREDICTED:_LOW_QUALITY_PROTEIN:_papilin_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030198 P extracellular matrix organization
GO:0030414 F peptidase inhibitor activity
GO:0031012 C extracellular matrix
FPKM:3.23 TPM:3.00
3217 A_BomaMG_comp13331_c0_seq1
2534bp
PREDICTED:_uncharacterized_protein_LOC101742436_isoform_X1_[Bombyx_mori]
FPKM:5.52 TPM:5.11
3218 A_BomaMG_comp133338_c0_seq1
578bp
FPKM:2.99 TPM:2.77
3219 A_BomaMG_comp13333_c0_seq1
1037bp
dopamine_N-acetyltransferase-like_[Bombyx_mori]
GO:0004059 F aralkylamine N-acetyltransferase activity
GO:0004060 F arylamine N-acetyltransferase activity
GO:0005737 C cytoplasm
GO:0006584 P catecholamine metabolic process
GO:0008080 F N-acetyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0030187 P melatonin biosynthetic process
GO:0030431 P sleep
GO:0042420 P dopamine catabolic process
GO:0042429 P serotonin catabolic process
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0046334 P octopamine catabolic process
GO:0048066 P developmental pigmentation
FPKM:39.59 TPM:36.65
3220 A_BomaMG_comp133342_c0_seq1
484bp
FPKM:1.79 TPM:1.66
3221 A_BomaMG_comp13334_c0_seq1
1934bp
cell_differentiation_protein_RCD1_homolog_[Bombyx_mori]
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006402 P mRNA catabolic process
GO:0006417 P regulation of translation
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:2000327 P obsolete positive regulation of nuclear receptor transcription coactivator activity
FPKM:6.58 TPM:6.09
3222 A_BomaMG_comp13335_c0_seq1
1274bp
PREDICTED:_uncharacterized_protein_LOC101746639_[Bombyx_mori]
FPKM:7.66 TPM:7.09
3223 A_BomaMG_comp133369_c0_seq1
587bp
FPKM:2.51 TPM:2.32
3224 A_BomaMG_comp13336_c0_seq1
582bp
ring-hydroxylating_oxygenase_subunit_alpha_[Haladaptatus_paucihalophilus]
FPKM:6.62 TPM:6.13
3225 A_BomaMG_comp133371_c0_seq1
759bp
PREDICTED:_histone-lysine_N-methyltransferase,_H3_lysine-79_specific_isoform_X2_[Bombyx_mori]
FPKM:1.52 TPM:1.41
3226 A_BomaMG_comp13337_c0_seq1
3168bp
AF032873_1_inebriated_protein_[Manduca_sexta]
GO:0005034 F osmosensor activity
GO:0005215 F transporter activity
GO:0005328 F neurotransmitter:sodium symporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0009414 P response to water deprivation
GO:0009881 F photoreceptor activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0019226 P transmission of nerve impulse
GO:0030154 P cell differentiation
GO:0042065 P glial cell growth
GO:0042066 P perineurial glial growth
GO:0047484 P regulation of response to osmotic stress
GO:0050891 P multicellular organismal water homeostasis
GO:0055085 P transmembrane transport
FPKM:63.35 TPM:58.66
3227 A_BomaMG_comp13339_c0_seq1
1646bp
PREDICTED:_uncharacterized_protein_LOC101738354_isoform_X1_[Bombyx_mori]
GO:0000794 C condensed nuclear chromosome
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007435 P salivary gland morphogenesis
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0031519 C PcG protein complex
GO:0035167 P larval lymph gland hemopoiesis
GO:0042803 F protein homodimerization activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
FPKM:5.71 TPM:5.28
3228 A_BomaMG_comp13340_c0_seq1
970bp
Uncharacterized_protein_OBRU01_15943_[Operophtera_brumata]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0042273 P ribosomal large subunit biogenesis
GO:0043023 F ribosomal large subunit binding
GO:0070130 P negative regulation of mitochondrial translation
GO:0090071 P negative regulation of ribosome biogenesis
FPKM:7.30 TPM:6.76
3229 A_BomaMG_comp13341_c0_seq1
2910bp
PREDICTED:_N-acetylgalactosamine_kinase_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0004335 F galactokinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006012 P galactose metabolic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0033858 F N-acetylgalactosamine kinase activity
GO:0046835 P carbohydrate phosphorylation
FPKM:6.25 TPM:5.78
3230 A_BomaMG_comp13341_c1_seq1
366bp
FPKM:1.66 TPM:1.54
3231 A_BomaMG_comp13343_c0_seq1
1032bp
cell_division_protein_[Bombyx_mori]
GO:0001510 P RNA methylation
GO:0002128 P tRNA nucleoside ribose methylation
GO:0002181 P cytoplasmic translation
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
FPKM:3.23 TPM:2.99
3232 A_BomaMG_comp13343_c0_seq2
989bp
cell_division_protein_[Bombyx_mori]
GO:0001510 P RNA methylation
GO:0002128 P tRNA nucleoside ribose methylation
GO:0002181 P cytoplasmic translation
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
FPKM:4.90 TPM:4.54
3233 A_BomaMG_comp13344_c0_seq1
4130bp
PREDICTED:_LOW_QUALITY_PROTEIN:_treacle_protein_[Bombyx_mori]
FPKM:5.05 TPM:4.68
3234 A_BomaMG_comp133458_c0_seq1
428bp
FPKM:2.48 TPM:2.29
3235 A_BomaMG_comp13345_c0_seq1
1813bp
nucleosome_assembly_protein_isoform_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0030332 F cyclin binding
GO:0042393 F histone binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051260 P protein homooligomerization
GO:0060215 P primitive hemopoiesis
FPKM:24.35 TPM:22.55
3236 A_BomaMG_comp13345_c0_seq2
2025bp
nucleosome_assembly_protein_isoform_2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0030332 F cyclin binding
GO:0042393 F histone binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051260 P protein homooligomerization
GO:0060215 P primitive hemopoiesis
FPKM:7.68 TPM:7.11
3237 A_BomaMG_comp13347_c0_seq1
333bp
FPKM:15.83 TPM:14.65
3238 A_BomaMG_comp133480_c0_seq1
429bp
FPKM:2.05 TPM:1.90
3239 A_BomaMG_comp13348_c0_seq1
1844bp
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_14_[Amyelois_transitella]
GO:0000502 C proteasome complex
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0070628 F proteasome binding
FPKM:6.96 TPM:6.44
3240 A_BomaMG_comp133492_c0_seq1
212bp
hypothetical_protein_EGM_00180,_partial_[Macaca_fascicularis]
FPKM:0.84 TPM:0.78
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