SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp13350_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		hypothetical_protein_KGM_15573_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
Transcript
Level		FPKM:7.02 TPM:6.50
ORF Entry
Sequence
(Nucleotide)
CGCGGGGCGGGGGCTGGCTGATCGCGACCTCTATTTTCCTGTCCCCCACCGTCGTGCCGT
TCGTCGCCGCTATGGCTCTGGCCGCGGAATCTTCGTCCTCGTAATTGACGTACGCCAAGC
CTTTCGGTTTCCCGTCCTTGAAAGTGACCACCCGGATGTCTTTCAGTTTGCCGTACTTCT
CGAATATTTCGGTCAAACACTCCTTATTGCAGCGCGAGTAAGGCAGGCCCGTCACGAATA
ACTTGTTCTTCTCCATCGTGGTAGCGTATTTGAAGGTCGCCTTAGATTTATCGGCCGAGT
ATCGAGACAAGAACATCGGTCTTCCGTCTAAAGGAGTTCGATCGTGCTTCAGAGCCTCCT
CCACTGAGTCCGCTGTCTTGTATTGACAGTAGCAAATAGAGCCGCCAAACGATTTCACTC
CTGATCTGAGCCGCATTTCGACGATGTCACCGTACTTCGATAATTCCTGTCGTAATTTAT
CTTCATCGACTTTAAAGTCTAGATTACTGACGAACAATGTGCAGGCCTCTGTGCTCGCAG
ACTGCGCTGTACCGGCTGCCTCTACGCGCTGTTTTTTATTCTCAGTTAATTCAGTCTCTT
CTTCAGTATGTGCCCGCTTGACTCCAGAACTACCTCCGTCCTTTTCTTTCACGGGCAATT
CTTGATCTCCGTCTCTTTTTCTCTTTACGTCACTAGCTTCATCACTACCGCCATTCAATT
TCCTTTTACCTTTCTGTTTGTTTTCGAGTTTTTTGTTTTTGTTGGCTGATTTTCCTTTTT
TATTATCATTTGTTTTATCAGTATCGTTTTTGTTGGTCATATTTTCCTTCAAAGCTTGAT
AATTCTTCCTCCACTCCCGTATTTTTAACTCACAAGTTTCTTGACACTCCTTACTGGTGT
CCAGCTTCCCGTAGTCTCGTTCGTAATCAGTCCAGAGGCGCGCTATGGCCGGGGGGTAGT
CGGTGACCGATCTCAACGCGCGTCTCAGCAGATCCCGGAACTTGAACTCGGACAGCGGAG
GAGACCGGCTACTTTCTAACTGTATCAAAGCTTCCCAGTACTTGGACATGGTTTTATTGA
AGCCATATTTGAATAATTCTTCAAAGATCTCTTTCCCTCGTTTTGGTGAATTCAAGAATT
TGTATTCAATTCTCGCCCAATACAATGGTATCTCACAATCATTCGCTTCATCGCCCCATG
CCTCAGCGAGCGAGTCCCAGGCCAGTCTGAATGTGCGCCTCAACCGCTCAATCTGATCGT
CGTCACTGAACTTCGTGTTGCGGCGCACGTACTCGAGATAGTTCAACCATAGCATTTCAG
CCTCCTTGTAAGATTCCAGACCTTTCGATAAGGCAGTCTCGAAGATCGACTTCACCTCGT
CGAAGTCTTTCTCCTCGTGTTCAGCCTGCTGCATCTTGAGGGTCCAAAAGGTGTGCTTCT
GCGGACAGCGCCGCGTGCACAGCTCCAGGACGCGCCAGTACGTCGCGCGTGATGACGTCA
CCTGGGTGTGCTTCGCGAACTCGACCAGCAACTCGAACACGGCCGGATTGAGCAAACATT
CGTACGTCGCCCGGTCGTACAGGAGCCTGAGCAGACCGTCGCTATCACATTCAGCATACT
TCTCTTCTACAGACAACTGCTTCACAAGATCAATATACTCAAGGTATACCTTGTAATTGG
CCATATAACATTGAGTGGTCTTTGTTCTGATTTCATATGGCATAATTTTCTTTAAATAAT
CCACAGCTGCCTTATGTTGCTGTTCCACCTTCTCTATGTACTCCTGTTCACGGATATCTT
TAGCAAAATCTTCAAATAGATCCCAGGCCTCCTGATTTCTGCTTATAGGAAGCGATGCCA
CCACCTCTAAACACCTCAACACACGGTCTTCTTGTTCTTTATAACCCGAATCTTCTTTGC
ATGTTTCATTTAGTTGTGATTTTTCAAAGTCAATTTTTAGATCCCACAACACTTTTCCTG
AATATGGATCGGAGCCTCCACGACGCAAAACTTCGTCAAGTTGCGCTCGAACTTTAGGTA
TTTCATCCAATGAAAGGGCCCACGAACTCCATCTTGACAGTATAGACATCGAGTAGCAAT
CACAGGTTGCCTTATAGAATAAATTGGCAATTAATTCTTCAGACTGTGAAATATTCTCTT
CTGTTCGAAGCCACAAGAGCCAATGATCAACTTTTATAACTGACATCTCCCATAATCTTT
CAAACGCCGTTCGCCATTGCCCCAGTTCCGATAGACGCCACAAAGTCTGGATCAATTCAA
TGTGATCATCATAATTAAAAGGATGTAATGTGATTTTGTGTTCATATTCGGCCACTTTCC
TCTGCCAATCTCCCATCTCCAATATTTCATCATCAGAATCTGGATCCTGGTCGCCATCAT
CTTCTTCAACCACAACTTCAATTTCATTTTCCCCTTCAGAACCGTTCTGAATTTCGTCTT
CTACTATCGCCATTGTTTATCACACGAGAGTAATCAATAACTGTGTAGTTTTGTATTTGT
TAAATTCACAAACGAACGAATAATGGCG
(2548 bp)

- SilkBase 1999-2023 -