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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2911 A_BomaMG_comp13091_c0_seq1
1290bp
PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X1_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
FPKM:6.07 TPM:5.62
2912 A_BomaMG_comp13092_c0_seq1
3641bp
PREDICTED:_complexin_[Amyelois_transitella]
GO:0005326 F neurotransmitter transmembrane transporter activity
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0006887 P exocytosis
GO:0007274 P neuromuscular synaptic transmission
GO:0016020 C membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0019905 F syntaxin binding
GO:0031594 C neuromuscular junction
GO:0043195 C terminal bouton
GO:0046928 P regulation of neurotransmitter secretion
GO:0048786 C presynaptic active zone
GO:0050804 P modulation of chemical synaptic transmission
GO:0051124 P synaptic assembly at neuromuscular junction
FPKM:7.21 TPM:6.68
2913 A_BomaMG_comp13094_c0_seq1
769bp
enoyl-CoA_hydratase_[Achromobacter_arsenitoxydans]
FPKM:2.31 TPM:2.13
2914 A_BomaMG_comp13095_c0_seq1
1246bp
PREDICTED:_2-methylene-furan-3-one_reductase-like_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:9.82 TPM:9.10
2915 A_BomaMG_comp13096_c0_seq1
724bp
FPKM:7.93 TPM:7.34
2916 A_BomaMG_comp13096_c1_seq1
1235bp
FPKM:7.35 TPM:6.81
2917 A_BomaMG_comp13099_c0_seq1
281bp
FPKM:7.34 TPM:6.79
2918 A_BomaMG_comp1309_c0_seq1
296bp
FPKM:1.17 TPM:1.08
2919 A_BomaMG_comp131007_c0_seq1
247bp
UDP-glycosyltransferase_UGT40B3_precursor_[Bombyx_mori]
FPKM:1.45 TPM:1.34
2920 A_BomaMG_comp13100_c0_seq1
793bp
FPKM:7.36 TPM:6.82
2921 A_BomaMG_comp13103_c0_seq1
1335bp
PREDICTED:_uncharacterized_protein_LOC101737485_isoform_X2_[Bombyx_mori]
FPKM:11.38 TPM:10.54
2922 A_BomaMG_comp13104_c0_seq1
840bp
golgi-specific_brefeldin_a-resistance_factor_[Danaus_plexippus]
FPKM:5.96 TPM:5.52
2923 A_BomaMG_comp13104_c0_seq2
695bp
golgi-specific_brefeldin_a-resistance_factor_[Danaus_plexippus]
FPKM:7.06 TPM:6.54
2924 A_BomaMG_comp13105_c0_seq1
1129bp
PREDICTED:_interleukin_enhancer_binding_factor_isoform_X2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006955 P immune response
GO:0016740 F transferase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:9.50 TPM:8.80
2925 A_BomaMG_comp13107_c0_seq1
1293bp
PREDICTED:_general_transcription_factor_IIH_subunit_2_[Amyelois_transitella]
GO:0000439 C transcription factor TFIIH core complex
GO:0003674 F molecular_function
GO:0004672 F protein kinase activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0046872 F metal ion binding
FPKM:10.14 TPM:9.39
2926 A_BomaMG_comp13109_c0_seq1
287bp
FPKM:2.21 TPM:2.05
2927 A_BomaMG_comp13111_c0_seq1
1220bp
PREDICTED:_transcription_elongation_factor_SPT6_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010793 P regulation of mRNA export from nucleus
GO:0016032 P viral process
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0045191 P regulation of isotype switching
GO:0050684 P regulation of mRNA processing
GO:0051028 P mRNA transport
GO:0051147 P regulation of muscle cell differentiation
GO:0061086 P negative regulation of histone H3-K27 methylation
FPKM:6.70 TPM:6.20
2928 A_BomaMG_comp13111_c0_seq2
1601bp
PREDICTED:_transcription_elongation_factor_SPT6_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0002805 P regulation of antimicrobial peptide biosynthetic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0008023 C transcription elongation factor complex
GO:0030707 P ovarian follicle cell development
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035101 C FACT complex
GO:0035327 C euchromatin
GO:0035363 C histone locus body
FPKM:7.20 TPM:6.66
2929 A_BomaMG_comp13111_c0_seq3
1210bp
PREDICTED:_transcription_elongation_factor_SPT6_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010793 P regulation of mRNA export from nucleus
GO:0016032 P viral process
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0045191 P regulation of isotype switching
GO:0050684 P regulation of mRNA processing
GO:0051028 P mRNA transport
GO:0051147 P regulation of muscle cell differentiation
GO:0061086 P negative regulation of histone H3-K27 methylation
FPKM:3.44 TPM:3.18
2930 A_BomaMG_comp13115_c0_seq1
654bp
PREDICTED:_coiled-coil_domain-containing_protein_58_[Amyelois_transitella]
GO:0005739 C mitochondrion
FPKM:10.40 TPM:9.63
2931 A_BomaMG_comp13116_c0_seq1
632bp
FPKM:3.46 TPM:3.20
2932 A_BomaMG_comp131177_c0_seq1
550bp
FPKM:2.58 TPM:2.38
2933 A_BomaMG_comp13117_c0_seq1
504bp
FPKM:11.88 TPM:11.00
2934 A_BomaMG_comp131183_c0_seq1
410bp
FPKM:1.63 TPM:1.51
2935 A_BomaMG_comp131186_c0_seq1
309bp
PREDICTED:_neuroblastoma-amplified_sequence-like_[Bombyx_mori]
FPKM:6.33 TPM:5.86
2936 A_BomaMG_comp131186_c0_seq2
309bp
PREDICTED:_neuroblastoma-amplified_sequence-like_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2937 A_BomaMG_comp131190_c0_seq1
270bp
FPKM:0.37 TPM:0.34
2938 A_BomaMG_comp131192_c0_seq1
354bp
FPKM:2.55 TPM:2.36
2939 A_BomaMG_comp131193_c0_seq1
1382bp
PREDICTED:_tetratricopeptide_repeat_protein_5-like_[Papilio_xuthus]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:1901796 P regulation of signal transduction by p53 class mediator
FPKM:2.06 TPM:1.91
2940 A_BomaMG_comp13119_c0_seq1
201bp
olfactory_receptor_[Bombyx_mori]
FPKM:10.56 TPM:9.78
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