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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2941 A_BomaMG_comp131206_c0_seq1
575bp
Histone-lysine_N-methyltransferase_SETMAR,_partial_[Acromyrmex_echinatior]
FPKM:2.24 TPM:2.07
2942 A_BomaMG_comp131208_c0_seq1
1159bp
PREDICTED:_NADH-cytochrome_b5_reductase-like_[Papilio_polytes]
GO:0004128 F cytochrome-b5 reductase activity, acting on NAD(P)H
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.52 TPM:1.41
2943 A_BomaMG_comp13121_c0_seq1
513bp
PREDICTED:_leucine--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002161 F aminoacyl-tRNA editing activity
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004823 F leucine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006429 P leucyl-tRNA aminoacylation
GO:0006450 P regulation of translational fidelity
GO:0016874 F ligase activity
FPKM:8.79 TPM:8.14
2944 A_BomaMG_comp131224_c0_seq1
1214bp
PREDICTED:_alkylated_DNA_repair_protein_alkB_homolog_1_isoform_X2_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0001764 P neuron migration
GO:0001890 P placenta development
GO:0003824 F catalytic activity
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005719 C euchromatin
GO:0005739 C mitochondrion
GO:0006281 P DNA repair
GO:0006307 P DNA dealkylation involved in DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008198 F ferrous iron binding
GO:0010468 P regulation of gene expression
GO:0016491 F oxidoreductase activity
GO:0016829 F lyase activity
GO:0030154 P cell differentiation
GO:0031175 P neuron projection development
GO:0042056 F chemoattractant activity
GO:0042245 P RNA repair
GO:0043524 P negative regulation of neuron apoptotic process
GO:0046872 F metal ion binding
GO:0048589 P developmental growth
GO:0050918 P positive chemotaxis
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070579 F methylcytosine dioxygenase activity
GO:0070989 P oxidative demethylation
GO:0080111 P DNA demethylation
FPKM:2.49 TPM:2.31
2945 A_BomaMG_comp131231_c0_seq1
728bp
PREDICTED:_KAT8_regulatory_NSL_complex_subunit_2_isoform_X2_[Papilio_xuthus]
GO:0000123 C histone acetyltransferase complex
GO:0005634 C nucleus
GO:0016568 P chromatin organization
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0043995 F histone acetyltransferase activity (H4-K5 specific)
GO:0043996 F histone acetyltransferase activity (H4-K8 specific)
GO:0044545 C NSL complex
GO:0046972 F histone acetyltransferase activity (H4-K16 specific)
FPKM:2.85 TPM:2.64
2946 A_BomaMG_comp131247_c0_seq1
714bp
FPKM:1.40 TPM:1.30
2947 A_BomaMG_comp131248_c0_seq1
1517bp
PREDICTED:_diuretic_hormone_receptor_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0008036 F diuretic hormone receptor activity
GO:0009755 P hormone-mediated signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:2.18 TPM:2.02
2948 A_BomaMG_comp13124_c0_seq1
253bp
FPKM:0.90 TPM:0.83
2949 A_BomaMG_comp131258_c0_seq1
493bp
FPKM:2.18 TPM:2.02
2950 A_BomaMG_comp131259_c0_seq1
488bp
FPKM:3.32 TPM:3.07
2951 A_BomaMG_comp13125_c0_seq1
756bp
FPKM:3.71 TPM:3.44
2952 A_BomaMG_comp13125_c1_seq1
1849bp
FPKM:5.78 TPM:5.35
2953 A_BomaMG_comp131263_c0_seq1
237bp
hypothetical_protein_KGM_01122_[Danaus_plexippus]
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
FPKM:6.09 TPM:5.64
2954 A_BomaMG_comp13126_c0_seq1
1283bp
PREDICTED:_protein_phosphatase_1D_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006470 P protein dephosphorylation
GO:0007049 P cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0009267 P cellular response to starvation
GO:0009314 P response to radiation
GO:0009617 P response to bacterium
GO:0016787 F hydrolase activity
GO:0035970 P peptidyl-threonine dephosphorylation
GO:0043169 F cation binding
GO:0046872 F metal ion binding
GO:0051019 F mitogen-activated protein kinase binding
FPKM:8.88 TPM:8.22
2955 A_BomaMG_comp13127_c0_seq1
3959bp
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744503_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
FPKM:5.93 TPM:5.49
2956 A_BomaMG_comp13127_c0_seq2
4100bp
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744503_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
FPKM:2.75 TPM:2.55
2957 A_BomaMG_comp131294_c0_seq1
720bp
PREDICTED:_UHRF1-binding_protein_1-like_isoform_X2_[Bombyx_mori]
FPKM:2.39 TPM:2.21
2958 A_BomaMG_comp131299_c0_seq1
1048bp
PREDICTED:_E3_ubiquitin-protein_ligase_MIB1_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005938 C cell cortex
GO:0006897 P endocytosis
GO:0007219 P Notch signaling pathway
GO:0007423 P sensory organ development
GO:0008104 P protein localization
GO:0008270 F zinc ion binding
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0008593 P regulation of Notch signaling pathway
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0045179 C apical cortex
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045807 P positive regulation of endocytosis
GO:0046331 P lateral inhibition
GO:0046872 F metal ion binding
GO:0048749 P compound eye development
GO:0061630 F ubiquitin protein ligase activity
FPKM:2.75 TPM:2.54
2959 A_BomaMG_comp13129_c0_seq1
1232bp
PREDICTED:_patronin_isoform_X2_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007049 P cell cycle
GO:0008017 F microtubule binding
GO:0030496 C midbody
GO:0030507 F spectrin binding
GO:0031175 P neuron projection development
GO:0051011 F microtubule minus-end binding
GO:0051013 P microtubule severing
FPKM:9.63 TPM:8.92
2960 A_BomaMG_comp131303_c0_seq1
1107bp
PREDICTED:_ZZ-type_zinc_finger-containing_protein_3_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:2.23 TPM:2.07
2961 A_BomaMG_comp13130_c0_seq1
1158bp
WD_repeat_domain_61_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0055087 C Ski complex
FPKM:11.78 TPM:10.91
2962 A_BomaMG_comp131323_c0_seq1
485bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:2.57 TPM:2.38
2963 A_BomaMG_comp13132_c0_seq1
943bp
PREDICTED:_uncharacterized_protein_LOC106133480_[Amyelois_transitella]
FPKM:12.50 TPM:11.57
2964 A_BomaMG_comp13133_c0_seq1
565bp
putative_protein_[Bombyx_mori]
FPKM:4.95 TPM:4.58
2965 A_BomaMG_comp13134_c0_seq1
373bp
PREDICTED:_reticulon-1-A_isoform_X2_[Bombyx_mori]
FPKM:1.77 TPM:1.64
2966 A_BomaMG_comp13138_c0_seq1
1565bp
proteasome_26S_non-ATPase_subunit_9_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000209 P protein polyubiquitination
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0002479 P antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005838 C proteasome regulatory particle
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006521 P regulation of cellular amino acid metabolic process
GO:0008540 C proteasome regulatory particle, base subcomplex
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0032024 P positive regulation of insulin secretion
GO:0033209 P tumor necrosis factor-mediated signaling pathway
GO:0038061 P NIK/NF-kappaB signaling
GO:0038095 P Fc-epsilon receptor signaling pathway
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043425 F bHLH transcription factor binding
GO:0043488 P regulation of mRNA stability
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046676 P negative regulation of insulin secretion
GO:0050852 P T cell receptor signaling pathway
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0060071 P Wnt signaling pathway, planar cell polarity pathway
GO:0070682 P proteasome regulatory particle assembly
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:8.51 TPM:7.88
2967 A_BomaMG_comp131393_c0_seq1
418bp
flagellar_motor_protein_MotA_[Geobacter_soli]
FPKM:1.72 TPM:1.59
2968 A_BomaMG_comp131396_c0_seq1
1081bp
PREDICTED:_transcription_initiation_factor_TFIID_subunit_7-like_[Papilio_polytes]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0008134 F transcription factor binding
GO:0035035 F histone acetyltransferase binding
GO:0044212 F transcription cis-regulatory region binding
GO:0051123 P RNA polymerase II preinitiation complex assembly
FPKM:1.62 TPM:1.50
2969 A_BomaMG_comp13139_c0_seq1
283bp
FPKM:0.45 TPM:0.42
2970 A_BomaMG_comp131406_c0_seq1
1955bp
PREDICTED:_N6-adenosine-methyltransferase_70_kDa_subunit_isoform_X2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0001510 P RNA methylation
GO:0001734 F mRNA (N6-adenosine)-methyltransferase activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006382 P adenosine to inosine editing
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008168 F methyltransferase activity
GO:0008173 F RNA methyltransferase activity
GO:0016422 F mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity
GO:0016556 P mRNA modification
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0019827 P stem cell population maintenance
GO:0031053 P primary miRNA processing
GO:0032259 P methylation
GO:0036396 C RNA N6-methyladenosine methyltransferase complex
GO:0048511 P rhythmic process
GO:0061157 P mRNA destabilization
GO:0080009 P mRNA methylation
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1990744 P primary miRNA methylation
FPKM:1.79 TPM:1.66
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