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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2041 A_BomaMG_comp12207_c0_seq1
216bp
PREDICTED:_aldose_reductase-like_isoform_X2_[Papilio_xuthus]
FPKM:11.66 TPM:10.80
2042 A_BomaMG_comp122081_c0_seq1
838bp
PREDICTED:_glypican-4_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0016020 C membrane
GO:0016477 P cell migration
GO:0031225 C anchored component of membrane
GO:0043395 F heparan sulfate proteoglycan binding
FPKM:2.37 TPM:2.20
2043 A_BomaMG_comp12209_c0_seq1
1668bp
PREDICTED:_formin-binding_protein_1-like_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006897 P endocytosis
GO:0006914 P autophagy
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0031410 C cytoplasmic vesicle
FPKM:10.24 TPM:9.49
2044 A_BomaMG_comp1220_c0_seq1
241bp
PREDICTED:_biotin--protein_ligase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000785 C chromatin
GO:0003824 F catalytic activity
GO:0004077 F biotin-[acetyl-CoA-carboxylase] ligase activity
GO:0004078 F biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity
GO:0004079 F biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity
GO:0004080 F biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity
GO:0005524 F ATP binding
GO:0005652 C nuclear lamina
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006464 P cellular protein modification process
GO:0008152 P metabolic process
GO:0008283 P cell population proliferation
GO:0009305 P protein biotinylation
GO:0009374 F biotin binding
GO:0016363 C nuclear matrix
GO:0016570 P histone modification
GO:0016874 F ligase activity
GO:0018271 F biotin-protein ligase activity
GO:0019899 F enzyme binding
GO:0042803 F protein homodimerization activity
GO:0070781 P response to biotin
GO:0071110 P histone biotinylation
FPKM:2.09 TPM:1.94
2045 A_BomaMG_comp1220_c1_seq1
205bp
PREDICTED:_biotin--protein_ligase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000785 C chromatin
GO:0003824 F catalytic activity
GO:0004077 F biotin-[acetyl-CoA-carboxylase] ligase activity
GO:0004078 F biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity
GO:0004079 F biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity
GO:0004080 F biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity
GO:0005524 F ATP binding
GO:0005652 C nuclear lamina
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006464 P cellular protein modification process
GO:0008152 P metabolic process
GO:0008283 P cell population proliferation
GO:0009305 P protein biotinylation
GO:0009374 F biotin binding
GO:0016363 C nuclear matrix
GO:0016570 P histone modification
GO:0016874 F ligase activity
GO:0018271 F biotin-protein ligase activity
GO:0019899 F enzyme binding
GO:0042803 F protein homodimerization activity
GO:0070781 P response to biotin
GO:0071110 P histone biotinylation
FPKM:1.93 TPM:1.79
2046 A_BomaMG_comp122111_c0_seq1
287bp
PREDICTED:_tetratricopeptide_repeat_protein_27_isoform_X3_[Chrysemys_picta_bellii]
FPKM:3.79 TPM:3.51
2047 A_BomaMG_comp122112_c0_seq1
256bp
FPKM:4.75 TPM:4.40
2048 A_BomaMG_comp12211_c0_seq1
4718bp
PREDICTED:_kinesin-like_protein_a_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000212 P meiotic spindle organization
GO:0000775 C chromosome, centromeric region
GO:0000922 C spindle pole
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005828 C kinetochore microtubule
GO:0005856 C cytoskeleton
GO:0005871 C kinesin complex
GO:0005874 C microtubule
GO:0007018 P microtubule-based movement
GO:0007019 P microtubule depolymerization
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007052 P mitotic spindle organization
GO:0007057 P spindle assembly involved in female meiosis I
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0007079 P mitotic chromosome movement towards spindle pole
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0008574 F plus-end-directed microtubule motor activity
GO:0051296 P establishment of meiotic spindle orientation
GO:0051298 P centrosome duplication
GO:0051301 P cell division
GO:0055028 C cortical microtubule
GO:0061673 C mitotic spindle astral microtubule
GO:0072687 C meiotic spindle
GO:0090307 P mitotic spindle assembly
GO:0090619 C meiotic spindle pole
GO:0097431 C mitotic spindle pole
FPKM:5.96 TPM:5.52
2049 A_BomaMG_comp12212_c0_seq1
1091bp
PREDICTED:_chromobox_protein_homolog_5-like_[Amyelois_transitella]
GO:0000118 C histone deacetylase complex
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000784 C chromosome, telomeric region
GO:0000792 C heterochromatin
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005720 C heterochromatin
GO:0005721 C pericentric heterochromatin
GO:0005730 C nucleolus
GO:0010369 C chromocenter
GO:0016605 C PML body
GO:0017053 C transcription repressor complex
GO:0030674 F protein-macromolecule adaptor activity
GO:0035064 F methylated histone binding
GO:0035097 C histone methyltransferase complex
GO:0042803 F protein homodimerization activity
GO:0042826 F histone deacetylase binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0070491 F DNA-binding transcription factor binding
FPKM:9.77 TPM:9.05
2050 A_BomaMG_comp12214_c0_seq1
763bp
PREDICTED:_cysteine--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004817 F cysteine-tRNA ligase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006423 P cysteinyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
FPKM:8.91 TPM:8.25
2051 A_BomaMG_comp12215_c0_seq1
1511bp
PREDICTED:_pinin_[Amyelois_transitella]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0005198 F structural molecule activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005882 C intermediate filament
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007155 P cell adhesion
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0030054 C cell junction
GO:0030057 C desmosome
GO:0035145 C exon-exon junction complex
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:11.38 TPM:10.53
2052 A_BomaMG_comp122173_c0_seq1
383bp
hypothetical_protein_CHLREDRAFT_168119_[Chlamydomonas_reinhardtii]
FPKM:2.86 TPM:2.65
2053 A_BomaMG_comp12217_c0_seq1
857bp
PREDICTED:_bis(5'-nucleosyl)-tetraphosphatase_[asymmetrical]_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0004081 F bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0006167 P AMP biosynthetic process
GO:0006172 P ADP biosynthetic process
GO:0006754 P ATP biosynthetic process
GO:0006915 P apoptotic process
GO:0008796 F bis(5'-nucleosyl)-tetraphosphatase activity
GO:0015967 P diadenosine tetraphosphate catabolic process
GO:0016787 F hydrolase activity
GO:0019693 P ribose phosphate metabolic process
GO:0043135 F 5-phosphoribosyl 1-pyrophosphate pyrophosphatase activity
FPKM:11.38 TPM:10.53
2054 A_BomaMG_comp12218_c0_seq1
606bp
hypothetical_protein_RR46_06421_[Papilio_xuthus]
FPKM:14.93 TPM:13.82
2055 A_BomaMG_comp1221_c0_seq1
416bp
PREDICTED:_uncharacterized_protein_LOC101743969_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007281 P germ cell development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0035511 P oxidative DNA demethylation
GO:0035514 F DNA demethylase activity
GO:0035516 F oxidative DNA demethylase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:1901537 P positive regulation of DNA demethylation
FPKM:1.16 TPM:1.07
2056 A_BomaMG_comp12221_c0_seq1
359bp
PREDICTED:_uncharacterized_protein_LOC106136406_[Amyelois_transitella]
FPKM:0.66 TPM:0.61
2057 A_BomaMG_comp12221_c0_seq2
435bp
PREDICTED:_uncharacterized_protein_LOC106136406_[Amyelois_transitella]
FPKM:20.00 TPM:18.52
2058 A_BomaMG_comp12223_c0_seq1
849bp
PREDICTED:_TM2_domain-containing_protein_almondex_[Amyelois_transitella]
GO:0001713 P ectodermal cell fate determination
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0007219 P Notch signaling pathway
GO:0007220 P Notch receptor processing
GO:0007275 P multicellular organism development
GO:0007398 P ectoderm development
GO:0007498 P mesoderm development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0044214 C spanning component of plasma membrane
GO:0045747 P positive regulation of Notch signaling pathway
GO:0046331 P lateral inhibition
FPKM:1.44 TPM:1.33
2059 A_BomaMG_comp12223_c0_seq2
925bp
PREDICTED:_TM2_domain-containing_protein_almondex_[Papilio_machaon]
GO:0001713 P ectodermal cell fate determination
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0007219 P Notch signaling pathway
GO:0007220 P Notch receptor processing
GO:0007275 P multicellular organism development
GO:0007398 P ectoderm development
GO:0007498 P mesoderm development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0044214 C spanning component of plasma membrane
GO:0045747 P positive regulation of Notch signaling pathway
GO:0046331 P lateral inhibition
FPKM:13.46 TPM:12.46
2060 A_BomaMG_comp12229_c0_seq1
1611bp
Chitin_synthase_regulatory_factor_2_[Operophtera_brumata]
GO:0005628 C prospore membrane
GO:0005737 C cytoplasm
GO:0006031 P chitin biosynthetic process
GO:0008047 F enzyme activator activity
GO:0016020 C membrane
GO:0030435 P sporulation resulting in formation of a cellular spore
GO:0030437 P ascospore formation
GO:0043085 P positive regulation of catalytic activity
GO:0071555 P cell wall organization
FPKM:16.83 TPM:15.58
2061 A_BomaMG_comp12236_c0_seq1
2546bp
hypothetical_protein_KGM_18427_[Danaus_plexippus]
GO:0001887 P selenium compound metabolic process
GO:0001958 P endochondral ossification
GO:0001974 P blood vessel remodeling
GO:0004122 F cystathionine beta-synthase activity
GO:0004124 F cysteine synthase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006535 P cysteine biosynthetic process from serine
GO:0006563 P L-serine metabolic process
GO:0006801 P superoxide metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0016829 F lyase activity
GO:0019343 P cysteine biosynthetic process via cystathionine
GO:0019344 P cysteine biosynthetic process
GO:0019346 P transsulfuration
GO:0020037 F heme binding
GO:0021587 P cerebellum morphogenesis
GO:0030170 F pyridoxal phosphate binding
GO:0030823 P obsolete regulation of cGMP metabolic process
GO:0031667 P response to nutrient levels
GO:0042803 F protein homodimerization activity
GO:0043066 P negative regulation of apoptotic process
GO:0043418 P homocysteine catabolic process
GO:0043506 P regulation of JUN kinase activity
GO:0046872 F metal ion binding
GO:0050667 P homocysteine metabolic process
GO:0050880 P blood vessel diameter maintenance
GO:0051593 P response to folic acid
GO:0060135 P maternal process involved in female pregnancy
GO:0060351 P cartilage development involved in endochondral bone morphogenesis
GO:0070814 P hydrogen sulfide biosynthetic process
GO:0071456 P cellular response to hypoxia
GO:0098605 F selenocystathionine beta-synthase activity
FPKM:13.75 TPM:12.73
2062 A_BomaMG_comp12237_c0_seq1
1025bp
hypothetical_protein_KGM_04498_[Danaus_plexippus]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000460 P maturation of 5.8S rRNA
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
FPKM:3.41 TPM:3.16
2063 A_BomaMG_comp12238_c0_seq1
509bp
FPKM:13.36 TPM:12.37
2064 A_BomaMG_comp12238_c1_seq1
792bp
FPKM:14.92 TPM:13.81
2065 A_BomaMG_comp12240_c0_seq1
793bp
PREDICTED:_DNA-directed_RNA_polymerase_II_16_kDa_polypeptide_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005700 C polytene chromosome
GO:0005701 C polytene chromosome chromocenter
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0022008 P neurogenesis
GO:0035079 P polytene chromosome puffing
GO:0044237 P cellular metabolic process
FPKM:16.00 TPM:14.82
2066 A_BomaMG_comp12242_c0_seq1
341bp
FPKM:16.74 TPM:15.50
2067 A_BomaMG_comp12244_c0_seq1
420bp
PREDICTED:_myotubularin-related_protein_3_[Bombyx_mori]
FPKM:14.93 TPM:13.82
2068 A_BomaMG_comp12246_c0_seq1
2837bp
PREDICTED:_alkylglycerol_monooxygenase-like_[Amyelois_transitella]
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006633 P fatty acid biosynthetic process
GO:0006643 P membrane lipid metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0046485 P ether lipid metabolic process
GO:0050479 F glyceryl-ether monooxygenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:11.27 TPM:10.44
2069 A_BomaMG_comp12247_c0_seq1
250bp
FPKM:3.26 TPM:3.02
2070 A_BomaMG_comp12248_c0_seq1
627bp
hypothetical_protein_KGM_18689_[Danaus_plexippus]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000398 P mRNA splicing, via spliceosome
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008134 F transcription factor binding
GO:0016580 C Sin3 complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:15.59 TPM:14.44
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