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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2011 A_BomaMG_comp12167_c0_seq1
838bp
FPKM:5.98 TPM:5.54
2012 A_BomaMG_comp12167_c1_seq1
522bp
FPKM:4.78 TPM:4.42
2013 A_BomaMG_comp12168_c0_seq1
3609bp
PREDICTED:_ATP-binding_cassette_sub-family_F_member_1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006413 P translational initiation
GO:0008494 F translation activator activity
GO:0016887 F ATP hydrolysis activity
GO:0042254 P ribosome biogenesis
GO:0042788 C polysomal ribosome
GO:0043022 F ribosome binding
GO:0045727 P positive regulation of translation
FPKM:8.70 TPM:8.05
2014 A_BomaMG_comp12168_c0_seq2
1866bp
PREDICTED:_ATP-binding_cassette_sub-family_F_member_1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006413 P translational initiation
GO:0008494 F translation activator activity
GO:0016887 F ATP hydrolysis activity
GO:0042254 P ribosome biogenesis
GO:0042788 C polysomal ribosome
GO:0043022 F ribosome binding
GO:0045727 P positive regulation of translation
FPKM:0.69 TPM:0.64
2015 A_BomaMG_comp12169_c0_seq1
2025bp
PREDICTED:_UPF0553_protein_C9orf64_homolog_[Papilio_machaon]
FPKM:10.71 TPM:9.92
2016 A_BomaMG_comp1216_c0_seq1
222bp
FPKM:1.40 TPM:1.29
2017 A_BomaMG_comp1216_c1_seq1
208bp
FPKM:2.72 TPM:2.52
2018 A_BomaMG_comp12170_c0_seq1
1309bp
PREDICTED:_uncharacterized_protein_LOC106117054_[Papilio_xuthus]
FPKM:10.35 TPM:9.59
2019 A_BomaMG_comp12173_c0_seq1
970bp
PREDICTED:_uncharacterized_protein_LOC106133968_[Amyelois_transitella]
FPKM:11.49 TPM:10.64
2020 A_BomaMG_comp12173_c0_seq2
460bp
Conserved_insect_protein_[Operophtera_brumata]
FPKM:1.63 TPM:1.51
2021 A_BomaMG_comp12176_c0_seq1
1839bp
PREDICTED:_proton-coupled_folate_transporter-like_[Papilio_xuthus]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:11.16 TPM:10.33
2022 A_BomaMG_comp121779_c0_seq1
424bp
PREDICTED:_general_transcription_factor_IIH_subunit_4-like_[Plutella_xylostella]
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
FPKM:1.26 TPM:1.17
2023 A_BomaMG_comp12177_c0_seq1
1000bp
PREDICTED:_lysine-specific_demethylase_3B_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016209 F antioxidant activity
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0032452 F histone demethylase activity
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0072718 P response to cisplatin
GO:0098869 P cellular oxidant detoxification
FPKM:11.62 TPM:10.76
2024 A_BomaMG_comp12178_c0_seq1
918bp
PREDICTED:_WD_repeat-containing_protein_26_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0008150 P biological_process
FPKM:9.56 TPM:8.85
2025 A_BomaMG_comp121790_c0_seq1
589bp
WAS_protein_family-like_1_[Papilio_machaon]
GO:0001578 P microtubule bundle formation
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0015031 P protein transport
GO:0030154 P cell differentiation
GO:0031941 C filamentous actin
GO:0034314 P Arp2/3 complex-mediated actin nucleation
GO:0035210 P prepupal development
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043014 F alpha-tubulin binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048477 P oogenesis
GO:0051017 P actin filament bundle assembly
GO:0051020 F GTPase binding
GO:0051764 P actin crosslink formation
GO:0071203 C WASH complex
FPKM:2.74 TPM:2.54
2026 A_BomaMG_comp1217_c0_seq1
386bp
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101743303_[Bombyx_mori]
FPKM:1.66 TPM:1.53
2027 A_BomaMG_comp12182_c0_seq1
470bp
hypothetical_protein_[Pandoraea_pnomenusa]
FPKM:10.46 TPM:9.69
2028 A_BomaMG_comp12185_c0_seq1
637bp
FPKM:9.67 TPM:8.95
2029 A_BomaMG_comp12187_c0_seq1
1110bp
PREDICTED:_uncharacterized_protein_LOC101745243_[Bombyx_mori]
FPKM:7.87 TPM:7.29
2030 A_BomaMG_comp12189_c0_seq1
1320bp
PREDICTED:_nucleoporin_Nup43_[Amyelois_transitella]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0007077 P mitotic nuclear membrane disassembly
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0051028 P mRNA transport
GO:0051301 P cell division
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
FPKM:10.46 TPM:9.69
2031 A_BomaMG_comp12191_c0_seq1
1312bp
Uncharacterized_protein_OBRU01_16851_[Operophtera_brumata]
FPKM:9.97 TPM:9.23
2032 A_BomaMG_comp12194_c0_seq1
489bp
hypothetical_protein_RR48_01882_[Papilio_machaon]
FPKM:6.84 TPM:6.33
2033 A_BomaMG_comp121979_c0_seq1
255bp
FPKM:7.88 TPM:7.30
2034 A_BomaMG_comp12199_c0_seq1
1338bp
PREDICTED:_male-enhanced_antigen_1_[Amyelois_transitella]
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
FPKM:10.33 TPM:9.56
2035 A_BomaMG_comp12200_c0_seq1
1167bp
PREDICTED:_adenosine_deaminase-like_protein_[Amyelois_transitella]
GO:0004000 F adenosine deaminase activity
GO:0005575 C cellular_component
GO:0005829 C cytosol
GO:0006154 P adenosine catabolic process
GO:0009117 P nucleotide metabolic process
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0043103 P hypoxanthine salvage
GO:0046103 P inosine biosynthetic process
GO:0046872 F metal ion binding
FPKM:9.82 TPM:9.09
2036 A_BomaMG_comp12201_c0_seq1
726bp
DNA_polymerase_epsilon_subunit_4_[Operophtera_brumata]
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0008622 C epsilon DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0043966 P histone H3 acetylation
GO:0046982 F protein heterodimerization activity
GO:0071897 P DNA biosynthetic process
FPKM:10.45 TPM:9.68
2037 A_BomaMG_comp122024_c0_seq1
460bp
PREDICTED:_phosphatidate_phosphatase_LPIN2_isoform_X3_[Bombyx_mori]
FPKM:4.50 TPM:4.17
2038 A_BomaMG_comp12202_c0_seq1
1564bp
PREDICTED:_metallophosphoesterase_1_homolog_isoform_X2_[Bombyx_mori]
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0006506 P GPI anchor biosynthetic process
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0008081 F phosphoric diester hydrolase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0016787 F hydrolase activity
GO:0030145 F manganese ion binding
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0034235 F GPI anchor binding
GO:0046872 F metal ion binding
GO:0070971 C endoplasmic reticulum exit site
FPKM:8.64 TPM:8.00
2039 A_BomaMG_comp12204_c0_seq1
2051bp
PREDICTED:_uncharacterized_protein_LOC101737485_isoform_X2_[Bombyx_mori]
FPKM:8.20 TPM:7.59
2040 A_BomaMG_comp12205_c0_seq1
958bp
PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_7_[Amyelois_transitella]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
GO:0070847 C core mediator complex
FPKM:10.90 TPM:10.09
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