SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2071 A_BomaMG_comp1224_c0_seq1
271bp
FPKM:1.10 TPM:1.02
2072 A_BomaMG_comp12250_c0_seq1
733bp
PREDICTED:_protein_transport_protein_Sec31A-like_isoform_X2_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0031410 C cytoplasmic vesicle
FPKM:12.28 TPM:11.37
2073 A_BomaMG_comp12252_c0_seq1
1179bp
PREDICTED:_UBX_domain-containing_protein_1_[Papilio_xuthus]
GO:0005737 C cytoplasm
FPKM:15.10 TPM:13.98
2074 A_BomaMG_comp12253_c0_seq1
509bp
PREDICTED:_general_transcription_factor_3C_polypeptide_6-like_isoform_X2_[Papilio_xuthus]
GO:0000127 C transcription factor TFIIIC complex
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0042791 P 5S class rRNA transcription by RNA polymerase III
GO:0042797 P tRNA transcription by RNA polymerase III
FPKM:18.63 TPM:17.25
2075 A_BomaMG_comp12254_c0_seq1
1438bp
PREDICTED:_uncharacterized_protein_LOC101736122_isoform_X1_[Bombyx_mori]
FPKM:13.17 TPM:12.19
2076 A_BomaMG_comp12256_c0_seq1
733bp
PREDICTED:_lysine-specific_demethylase_3B_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007596 P blood coagulation
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0032454 F histone H3-methyl-lysine-9 demethylase activity
GO:0033169 P histone H3-K9 demethylation
GO:0046872 F metal ion binding
GO:0046966 F thyroid hormone receptor binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:16.40 TPM:15.18
2077 A_BomaMG_comp12257_c0_seq1
2793bp
PREDICTED:_CLIP-associating_protein_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000070 P mitotic sister chromatid segregation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000922 C spindle pole
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005827 C polar microtubule
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005876 C spindle microtubule
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007052 P mitotic spindle organization
GO:0007067 P mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0007282 P cystoblast division
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0019827 P stem cell population maintenance
GO:0030154 P cell differentiation
GO:0030426 C growth cone
GO:0030723 P ovarian fusome organization
GO:0031116 P positive regulation of microtubule polymerization
GO:0032154 C cleavage furrow
GO:0035099 P hemocyte migration
GO:0035371 C microtubule plus-end
GO:0040001 P establishment of mitotic spindle localization
GO:0042995 C cell projection
GO:0045169 C fusome
GO:0045172 C germline ring canal
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046602 P regulation of mitotic centrosome separation
GO:0048477 P oogenesis
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051315 P attachment of mitotic spindle microtubules to kinetochore
GO:0090307 P mitotic spindle assembly
FPKM:9.30 TPM:8.61
2078 A_BomaMG_comp12257_c0_seq2
632bp
FPKM:4.57 TPM:4.23
2079 A_BomaMG_comp122587_c0_seq1
1244bp
FPKM:2.01 TPM:1.86
2080 A_BomaMG_comp12258_c0_seq1
518bp
PREDICTED:_protein_CutA_homolog_[Bombyx_mori]
GO:0010038 P response to metal ion
FPKM:18.14 TPM:16.79
2081 A_BomaMG_comp12261_c0_seq1
671bp
PREDICTED:_myotubularin-related_protein_3_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0046872 F metal ion binding
FPKM:14.32 TPM:13.26
2082 A_BomaMG_comp12269_c0_seq1
934bp
PREDICTED:_LOW_QUALITY_PROTEIN:_dihydrolipoyllysine-residue_acetyltransferase_component_of_pyruvate_dehydrogenase_complex,_mitochondrial_[Bombyx_mori]
GO:0004742 F dihydrolipoyllysine-residue acetyltransferase activity
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006090 P pyruvate metabolic process
GO:0006096 P glycolytic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0045254 C pyruvate dehydrogenase complex
FPKM:82.40 TPM:76.30
2083 A_BomaMG_comp1226_c0_seq1
204bp
hypothetical_protein_[Uliginosibacterium_gangwonense]
FPKM:0.99 TPM:0.91
2084 A_BomaMG_comp1226_c1_seq1
299bp
putative_viral_polymerase_[Chum_salmon_reovirus_CS]
FPKM:1.14 TPM:1.06
2085 A_BomaMG_comp12270_c0_seq1
1047bp
Protein_charybde_[Operophtera_brumata]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
GO:0006979 P response to oxidative stress
GO:0007275 P multicellular organism development
GO:0008258 P head involution
GO:0009968 P negative regulation of signal transduction
GO:0032006 P regulation of TOR signaling
FPKM:53.71 TPM:49.73
2086 A_BomaMG_comp12270_c0_seq2
491bp
hypothetical_protein_KGM_08245_[Danaus_plexippus]
FPKM:2.53 TPM:2.34
2087 A_BomaMG_comp12273_c0_seq1
586bp
PREDICTED:_histone_H4-like_isoform_X2_[Dipodomys_ordii]
GO:0000786 C nucleosome
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006334 P nucleosome assembly
GO:0006352 P DNA-templated transcription, initiation
GO:0046982 F protein heterodimerization activity
FPKM:115.35 TPM:106.81
2088 A_BomaMG_comp12273_c1_seq1
302bp
NADH_dehydrogenase_subunit_4_(mitochondrion)_[Cyrtarachne_nagasakiensis]
FPKM:44.53 TPM:41.23
2089 A_BomaMG_comp12274_c0_seq1
2025bp
hypothetical_protein_KGM_22037_[Danaus_plexippus]
GO:0000104 F succinate dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005740 C mitochondrial envelope
GO:0005743 C mitochondrial inner membrane
GO:0005749 C mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
GO:0006099 P tricarboxylic acid cycle
GO:0008177 F succinate dehydrogenase (ubiquinone) activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0020037 F heme binding
GO:0046872 F metal ion binding
GO:0048039 F ubiquinone binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:77.72 TPM:71.97
2090 A_BomaMG_comp122750_c0_seq1
1189bp
PREDICTED:_syntaxin-16_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0005484 F SNAP receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006906 P vesicle fusion
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0019905 F syntaxin binding
GO:0031201 C SNARE complex
GO:0031985 C Golgi cisterna
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043231 C intracellular membrane-bounded organelle
GO:0048278 P vesicle docking
GO:0048471 C perinuclear region of cytoplasm
GO:0090161 P Golgi ribbon formation
FPKM:1.68 TPM:1.56
2091 A_BomaMG_comp12276_c0_seq1
3541bp
PREDICTED:_NADP-dependent_malic_enzyme_[Bombyx_mori]
GO:0004470 F malic enzyme activity
GO:0004471 F malate dehydrogenase (decarboxylating) (NAD+) activity
GO:0004473 F malate dehydrogenase (decarboxylating) (NADP+) activity
GO:0005737 C cytoplasm
GO:0006108 P malate metabolic process
GO:0008948 F oxaloacetate decarboxylase activity
GO:0016491 F oxidoreductase activity
GO:0046872 F metal ion binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:56.63 TPM:52.44
2092 A_BomaMG_comp12277_c0_seq1
1315bp
Hydroxybutyrate_dehydrogenase_[Operophtera_brumata]
GO:0004316 F 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0030497 P fatty acid elongation
GO:0050661 F NADP binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:68.39 TPM:63.33
2093 A_BomaMG_comp12279_c0_seq1
1746bp
PREDICTED:_LOW_QUALITY_PROTEIN:_adenosine_deaminase_CECR1-like_[Bombyx_mori]
GO:0004000 F adenosine deaminase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006154 P adenosine catabolic process
GO:0008201 F heparin binding
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0031685 F adenosine receptor binding
GO:0043394 F proteoglycan binding
GO:0046872 F metal ion binding
FPKM:81.53 TPM:75.49
2094 A_BomaMG_comp1227_c0_seq1
235bp
FPKM:1.14 TPM:1.05
2095 A_BomaMG_comp12280_c0_seq1
1763bp
Glycerophosphodiester_phosphodiesterase_[Operophtera_brumata]
GO:0006071 P glycerol metabolic process
GO:0006629 P lipid metabolic process
GO:0008081 F phosphoric diester hydrolase activity
GO:0008889 F glycerophosphodiester phosphodiesterase activity
GO:0016787 F hydrolase activity
FPKM:25.47 TPM:23.59
2096 A_BomaMG_comp12280_c0_seq2
1675bp
Glycerophosphodiester_phosphodiesterase_[Operophtera_brumata]
GO:0006071 P glycerol metabolic process
GO:0006629 P lipid metabolic process
GO:0008081 F phosphoric diester hydrolase activity
GO:0008889 F glycerophosphodiester phosphodiesterase activity
GO:0016787 F hydrolase activity
FPKM:53.23 TPM:49.29
2097 A_BomaMG_comp12281_c0_seq1
422bp
PREDICTED:_ataxin-2-like_protein_[Bombyx_mori]
GO:0002091 P negative regulation of receptor internalization
GO:0003723 F RNA binding
GO:0005154 F epidermal growth factor receptor binding
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0008022 F protein C-terminus binding
GO:0010494 C cytoplasmic stress granule
GO:0010603 P regulation of cytoplasmic mRNA processing body assembly
GO:0016020 C membrane
GO:0016070 P RNA metabolic process
GO:0030529 C ribonucleoprotein complex
GO:0033962 P P-body assembly
GO:0034063 P stress granule assembly
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0050658 P RNA transport
FPKM:5.22 TPM:4.83
2098 A_BomaMG_comp12282_c0_seq1
2025bp
6-phosphogluconate_dehydrogenase_[Bombyx_mori]
GO:0004616 F phosphogluconate dehydrogenase (decarboxylating) activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006098 P pentose-phosphate shunt
GO:0009051 P pentose-phosphate shunt, oxidative branch
GO:0016491 F oxidoreductase activity
GO:0019322 P pentose biosynthetic process
GO:0019521 P D-gluconate metabolic process
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
FPKM:73.69 TPM:68.24
2099 A_BomaMG_comp122832_c0_seq1
457bp
FPKM:1.11 TPM:1.03
2100 A_BomaMG_comp12283_c0_seq1
1954bp
leukotriene_A-4_hydrolase_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0004301 F epoxide hydrolase activity
GO:0004463 F leukotriene-A4 hydrolase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0019370 P leukotriene biosynthetic process
GO:0042277 F peptide binding
GO:0043171 P peptide catabolic process
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0070006 F metalloaminopeptidase activity
GO:0070062 C extracellular exosome
FPKM:80.02 TPM:74.09
previous next from show/39865

- SilkBase 1999-2023 -