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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1981 A_BomaMG_comp12134_c0_seq1
505bp
cold-related_protein_precursor_[Bombyx_mori]
FPKM:24.38 TPM:22.57
1982 A_BomaMG_comp121356_c0_seq1
597bp
FPKM:2.04 TPM:1.89
1983 A_BomaMG_comp12135_c0_seq1
1032bp
PREDICTED:_serine_hydrolase-like_protein_[Papilio_xuthus]
GO:0005739 C mitochondrion
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:13.33 TPM:12.34
1984 A_BomaMG_comp12137_c0_seq1
363bp
integrase_[Pseudomonas_monteilii]
FPKM:12.13 TPM:11.23
1985 A_BomaMG_comp121386_c0_seq1
1513bp
PREDICTED:_monosaccharide-sensing_protein_3-like_[Plutella_xylostella]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:2.39 TPM:2.21
1986 A_BomaMG_comp12139_c0_seq1
598bp
PREDICTED:_golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
FPKM:11.80 TPM:10.92
1987 A_BomaMG_comp1213_c0_seq1
265bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.57 TPM:1.45
1988 A_BomaMG_comp1213_c1_seq1
461bp
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:1.46 TPM:1.35
1989 A_BomaMG_comp121400_c0_seq1
203bp
FPKM:1.01 TPM:0.94
1990 A_BomaMG_comp12140_c0_seq1
1647bp
PREDICTED:_protein_FAM32A-like_[Plutella_xylostella]
GO:0005634 C nucleus
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
FPKM:7.08 TPM:6.56
1991 A_BomaMG_comp12143_c0_seq1
1400bp
PREDICTED:_general_transcription_factor_IIF_subunit_1_isoform_X1_[Bombyx_mori]
GO:0001096 F TFIIF-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0005634 C nucleus
GO:0005674 C transcription factor TFIIF complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0016740 F transferase activity
GO:0022008 P neurogenesis
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060261 P positive regulation of transcription initiation from RNA polymerase II promoter
FPKM:11.53 TPM:10.67
1992 A_BomaMG_comp12143_c0_seq2
1389bp
PREDICTED:_general_transcription_factor_IIF_subunit_1_isoform_X2_[Bombyx_mori]
GO:0001096 F TFIIF-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0005634 C nucleus
GO:0005674 C transcription factor TFIIF complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0016740 F transferase activity
GO:0022008 P neurogenesis
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060261 P positive regulation of transcription initiation from RNA polymerase II promoter
FPKM:0.99 TPM:0.91
1993 A_BomaMG_comp12146_c0_seq1
1019bp
PREDICTED:_corepressor_interacting_with_RBPJ_1_[Amyelois_transitella]
GO:0000118 C histone deacetylase complex
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:11.19 TPM:10.37
1994 A_BomaMG_comp12149_c0_seq1
729bp
PREDICTED:_steroid_receptor_RNA_activator_1-like_[Plutella_xylostella]
GO:0003677 F DNA binding
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005831 C steroid hormone aporeceptor complex
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0008283 P cell population proliferation
GO:0010861 F obsolete thyroid hormone receptor coactivator activity
GO:0015630 C microtubule cytoskeleton
GO:0030154 P cell differentiation
GO:0030374 F nuclear receptor coactivator activity
GO:0030529 C ribonucleoprotein complex
GO:0031252 C cell leading edge
GO:0042981 P regulation of apoptotic process
GO:0045171 C intercellular bridge
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:2000273 P positive regulation of signaling receptor activity
FPKM:11.38 TPM:10.54
1995 A_BomaMG_comp12150_c0_seq1
3644bp
PREDICTED:_phosphofurin_acidic_cluster_sorting_protein_1_[Bombyx_mori]
GO:0000042 P protein localization to Golgi apparatus
GO:0005794 C Golgi apparatus
GO:0030137 C COPI-coated vesicle
GO:0032092 P positive regulation of protein binding
GO:0034613 P cellular protein localization
GO:0044325 F transmembrane transporter binding
GO:0048471 C perinuclear region of cytoplasm
GO:0072661 P protein localization to plasma membrane
FPKM:8.05 TPM:7.46
1996 A_BomaMG_comp12151_c0_seq1
4103bp
HOP_precursor_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0042052 P rhabdomere development
GO:0046716 P muscle cell cellular homeostasis
GO:0072499 P photoreceptor cell axon guidance
FPKM:7.03 TPM:6.51
1997 A_BomaMG_comp12153_c0_seq1
979bp
putative_translin-associated_factor_X_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0031687 F A2A adenosine receptor binding
GO:0032403 F protein-containing complex binding
GO:0043565 F sequence-specific DNA binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
FPKM:11.84 TPM:10.97
1998 A_BomaMG_comp12154_c0_seq1
768bp
PREDICTED:_uncharacterized_protein_LOC106129002_[Amyelois_transitella]
FPKM:9.93 TPM:9.20
1999 A_BomaMG_comp12156_c0_seq1
1642bp
PREDICTED:_ribosome_maturation_protein_SBDS-like_[Plutella_xylostella]
GO:0000922 C spindle pole
GO:0001833 P inner cell mass cell proliferation
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006364 P rRNA processing
GO:0008017 F microtubule binding
GO:0008150 P biological_process
GO:0008283 P cell population proliferation
GO:0019843 F rRNA binding
GO:0030282 P bone mineralization
GO:0030595 P leukocyte chemotaxis
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0048539 P bone marrow development
FPKM:7.18 TPM:6.65
2000 A_BomaMG_comp12157_c0_seq1
1000bp
PREDICTED:_prisilkin-39-like_[Amyelois_transitella]
FPKM:12.20 TPM:11.30
2001 A_BomaMG_comp12158_c0_seq1
607bp
FPKM:10.59 TPM:9.81
2002 A_BomaMG_comp12159_c0_seq1
269bp
FPKM:4.13 TPM:3.82
2003 A_BomaMG_comp12160_c0_seq1
520bp
FPKM:9.51 TPM:8.81
2004 A_BomaMG_comp12160_c0_seq2
1650bp
ribonucleoside_diphosphate_reductase_small_subunit_[Bombyx_mori]
GO:0004748 F ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005971 C ribonucleoside-diphosphate reductase complex
GO:0006260 P DNA replication
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0009186 P deoxyribonucleoside diphosphate metabolic process
GO:0009263 P deoxyribonucleotide biosynthetic process
GO:0016491 F oxidoreductase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:12.07 TPM:11.18
2005 A_BomaMG_comp121617_c0_seq1
1178bp
PREDICTED:_prostaglandin_F_synthase-like_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001516 P prostaglandin biosynthetic process
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0006693 P prostaglandin metabolic process
GO:0016491 F oxidoreductase activity
GO:0036131 F prostaglandin D2 11-ketoreductase activity
GO:0047017 F prostaglandin-F synthase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.51 TPM:2.33
2006 A_BomaMG_comp12162_c0_seq1
531bp
PREDICTED:_acetyl-CoA_carboxylase_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003989 F acetyl-CoA carboxylase activity
GO:0004075 F biotin carboxylase activity
GO:0005524 F ATP binding
GO:0005623 C obsolete cell
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008152 P metabolic process
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:2001295 P malonyl-CoA biosynthetic process
FPKM:18.52 TPM:17.15
2007 A_BomaMG_comp12164_c0_seq1
929bp
PREDICTED:_phosphomevalonate_kinase_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004631 F phosphomevalonate kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0006629 P lipid metabolic process
GO:0006694 P steroid biosynthetic process
GO:0006695 P cholesterol biosynthetic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0016126 P sterol biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019287 P isopentenyl diphosphate biosynthetic process, mevalonate pathway
FPKM:11.77 TPM:10.90
2008 A_BomaMG_comp12165_c0_seq1
3723bp
PREDICTED:_DNA-directed_RNA_polymerase_II_subunit_RPB2_[Papilio_machaon]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0032549 F ribonucleoside binding
GO:0046872 F metal ion binding
FPKM:9.96 TPM:9.22
2009 A_BomaMG_comp121667_c0_seq1
999bp
hypothetical_protein_[Pseudomonas_stutzeri]
FPKM:2.73 TPM:2.53
2010 A_BomaMG_comp121679_c0_seq1
1177bp
FPKM:1.53 TPM:1.42
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