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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1951 A_BomaMG_comp12107_c0_seq1
556bp
PREDICTED:_cytochrome_c_oxidase_assembly_protein_COX19_[Plutella_xylostella]
GO:0005737 C cytoplasm
GO:0005758 C mitochondrial intermembrane space
GO:0005829 C cytosol
GO:0009060 P aerobic respiration
GO:0033617 P mitochondrial cytochrome c oxidase assembly
FPKM:23.98 TPM:22.21
1952 A_BomaMG_comp12108_c0_seq1
697bp
DNA-directed_RNA_polymerase_subunit_6-like_protein_[Bombyx_mori]
GO:0001054 F RNA polymerase I activity
GO:0001055 F RNA polymerase II activity
GO:0001056 F RNA polymerase III activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005666 C RNA polymerase III complex
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006360 P transcription by RNA polymerase I
GO:0006366 P transcription by RNA polymerase II
GO:0006383 P transcription by RNA polymerase III
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
FPKM:18.98 TPM:17.57
1953 A_BomaMG_comp12109_c0_seq1
884bp
Ssu72_RNA_polymerase_II_CTD_phosphatase_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
FPKM:18.75 TPM:17.36
1954 A_BomaMG_comp12110_c0_seq1
899bp
DnaJ-26,_partial_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006417 P regulation of translation
GO:0006457 P protein folding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031090 C organelle membrane
GO:0031965 C nuclear membrane
GO:0043022 F ribosome binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0050708 P regulation of protein secretion
GO:0051087 F chaperone binding
FPKM:22.03 TPM:20.40
1955 A_BomaMG_comp121116_c0_seq1
380bp
hypothetical_protein_[Butyrivibrio_sp._NC2007]
FPKM:0.51 TPM:0.47
1956 A_BomaMG_comp12111_c0_seq1
661bp
PREDICTED:_H/ACA_ribonucleoprotein_complex_subunit_3_[Papilio_machaon]
GO:0001522 P pseudouridine synthesis
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0042254 P ribosome biogenesis
GO:0060215 P primitive hemopoiesis
GO:0072588 C box H/ACA RNP complex
FPKM:15.82 TPM:14.65
1957 A_BomaMG_comp121126_c0_seq1
345bp
PREDICTED:_transcription_elongation_factor_SPT6_[Bombyx_mori]
FPKM:4.55 TPM:4.21
1958 A_BomaMG_comp12112_c0_seq1
1745bp
ADP-ribosylation_factor_GTPase-activating_protein_3_[Papilio_xuthus]
FPKM:17.83 TPM:16.51
1959 A_BomaMG_comp12113_c0_seq1
1355bp
PREDICTED:_myosin-IA_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005938 C cell cortex
GO:0007368 P determination of left/right symmetry
GO:0007498 P mesoderm development
GO:0008152 P metabolic process
GO:0016459 C myosin complex
GO:0042623 F ATP hydrolysis activity
GO:0048803 P imaginal disc-derived male genitalia morphogenesis
GO:0071907 P determination of digestive tract left/right asymmetry
FPKM:16.29 TPM:15.08
1960 A_BomaMG_comp12115_c0_seq1
372bp
PREDICTED:_uncharacterized_protein_LOC105842489_[Bombyx_mori]
FPKM:30.58 TPM:28.32
1961 A_BomaMG_comp12116_c0_seq1
1066bp
PREDICTED:_NFU1_iron-sulfur_cluster_scaffold_homolog,_mitochondrial-like_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005506 F iron ion binding
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0016226 P iron-sulfur cluster assembly
GO:0051536 F iron-sulfur cluster binding
FPKM:19.73 TPM:18.27
1962 A_BomaMG_comp12117_c0_seq1
747bp
nuclear_cap-binding_protein_subunit_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000339 F RNA cap binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005846 C nuclear cap binding complex
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0031047 P gene silencing by RNA
GO:0045292 P mRNA cis splicing, via spliceosome
FPKM:21.62 TPM:20.02
1963 A_BomaMG_comp12118_c0_seq1
2851bp
PREDICTED:_L-ascorbate_oxidase_isoform_X1_[Bombyx_mori]
GO:0005507 F copper ion binding
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0046274 P lignin catabolic process
GO:0046872 F metal ion binding
GO:0052716 F hydroquinone:oxygen oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:4.91 TPM:4.55
1964 A_BomaMG_comp12118_c0_seq2
2707bp
PREDICTED:_L-ascorbate_oxidase_isoform_X1_[Bombyx_mori]
GO:0005507 F copper ion binding
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0046274 P lignin catabolic process
GO:0046872 F metal ion binding
GO:0052716 F hydroquinone:oxygen oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:10.78 TPM:9.98
1965 A_BomaMG_comp12121_c0_seq1
6107bp
hypothetical_protein_KGM_01509_[Danaus_plexippus]
GO:0002116 C semaphorin receptor complex
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017154 F semaphorin receptor activity
GO:0021785 P branchiomotor neuron axon guidance
GO:0030334 P regulation of cell migration
GO:0042803 F protein homodimerization activity
GO:0048675 P axon extension
GO:0048696 P regulation of collateral sprouting in absence of injury
GO:0048755 P branching morphogenesis of a nerve
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0060272 P embryonic skeletal joint morphogenesis
GO:0071526 P semaphorin-plexin signaling pathway
GO:1902287 P semaphorin-plexin signaling pathway involved in axon guidance
FPKM:16.58 TPM:15.35
1966 A_BomaMG_comp12122_c0_seq1
1413bp
LDLR_chaperone_boca_precursor_[Papilio_xuthus]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006612 P protein targeting to membrane
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0012505 C endomembrane system
GO:0016055 P Wnt signaling pathway
GO:0032799 P low-density lipoprotein receptor particle metabolic process
GO:0045177 C apical part of cell
GO:0048477 P oogenesis
GO:0048728 P proboscis development
FPKM:14.37 TPM:13.31
1967 A_BomaMG_comp12124_c0_seq1
1312bp
FPKM:4.13 TPM:3.82
1968 A_BomaMG_comp12125_c0_seq1
2026bp
PREDICTED:_neutral_and_basic_amino_acid_transport_protein_rBAT_isoform_X2_[Bombyx_mori]
GO:0000023 P maltose metabolic process
GO:0003824 F catalytic activity
GO:0004558 F alpha-1,4-glucosidase activity
GO:0005975 P carbohydrate metabolic process
GO:0006006 P glucose metabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0032450 F maltose alpha-glucosidase activity
GO:0043169 F cation binding
FPKM:19.62 TPM:18.17
1969 A_BomaMG_comp121279_c0_seq1
404bp
PREDICTED:_uncharacterized_protein_LOC105842388_[Bombyx_mori]
FPKM:3.20 TPM:2.96
1970 A_BomaMG_comp12127_c0_seq1
337bp
chorion_class_A_[Bombyx_mori]
FPKM:5.43 TPM:5.03
1971 A_BomaMG_comp12128_c0_seq1
795bp
PREDICTED:_uncharacterized_protein_LOC101745080_isoform_X2_[Bombyx_mori]
FPKM:1.99 TPM:1.84
1972 A_BomaMG_comp12129_c0_seq1
1344bp
PREDICTED:_peroxisome_biogenesis_factor_10_[Amyelois_transitella]
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0007031 P peroxisome organization
GO:0008022 F protein C-terminus binding
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016558 P protein import into peroxisome matrix
GO:0046872 F metal ion binding
FPKM:17.99 TPM:16.66
1973 A_BomaMG_comp1212_c0_seq1
209bp
FPKM:0.89 TPM:0.82
1974 A_BomaMG_comp121303_c0_seq1
922bp
PREDICTED:_macrophage_erythroblast_attacher_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0043249 P erythrocyte maturation
GO:0051301 P cell division
FPKM:1.97 TPM:1.82
1975 A_BomaMG_comp121304_c0_seq1
1319bp
FPKM:1.61 TPM:1.49
1976 A_BomaMG_comp12130_c0_seq1
2576bp
DnaJ_(Hsp40)_homolog_9_[Bombyx_mori]
GO:0001671 F ATPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006457 P protein folding
GO:0016020 C membrane
GO:0031072 F heat shock protein binding
GO:0032781 P positive regulation of ATP-dependent activity
GO:0070062 C extracellular exosome
GO:0070389 P chaperone cofactor-dependent protein refolding
GO:1900034 P regulation of cellular response to heat
FPKM:20.00 TPM:18.52
1977 A_BomaMG_comp12131_c0_seq1
1508bp
PREDICTED:_elongation_of_very_long_chain_fatty_acids_protein_6_[Papilio_xuthus]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0019367 P fatty acid elongation, saturated fatty acid
GO:0042759 P long-chain fatty acid biosynthetic process
FPKM:22.88 TPM:21.18
1978 A_BomaMG_comp12132_c0_seq1
348bp
PREDICTED:_interferon-related_developmental_regulator_2_[Bombyx_mori]
FPKM:30.47 TPM:28.22
1979 A_BomaMG_comp121349_c0_seq1
995bp
PREDICTED:_E3_ubiquitin-protein_ligase_RNF19B-like_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1980 A_BomaMG_comp121349_c0_seq2
994bp
PREDICTED:_E3_ubiquitin-protein_ligase_RNF19B-like_[Bombyx_mori]
FPKM:2.75 TPM:2.55
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