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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1741 A_BomaMG_comp119263_c0_seq1
588bp
FPKM:2.58 TPM:2.39
1742 A_BomaMG_comp119264_c0_seq1
212bp
FPKM:2.52 TPM:2.33
1743 A_BomaMG_comp119279_c0_seq1
1496bp
PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_UBR1-like_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0005737 C cytoplasm
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
FPKM:2.86 TPM:2.65
1744 A_BomaMG_comp11927_c0_seq1
751bp
FPKM:2.38 TPM:2.20
1745 A_BomaMG_comp119280_c0_seq1
474bp
hypothetical_protein_RR46_09247_[Papilio_xuthus]
FPKM:4.17 TPM:3.86
1746 A_BomaMG_comp119296_c0_seq1
352bp
PREDICTED:_steroid_hormone_receptor_ERR1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0005496 F steroid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:5.36 TPM:4.96
1747 A_BomaMG_comp11929_c0_seq1
482bp
FPKM:2.03 TPM:1.88
1748 A_BomaMG_comp1192_c0_seq1
238bp
FPKM:2.18 TPM:2.02
1749 A_BomaMG_comp11930_c0_seq1
530bp
proliferating_cell_nuclear_antigen_[Ostreococcus_lucimarinus_virus_OlV4]
FPKM:2.82 TPM:2.61
1750 A_BomaMG_comp11931_c0_seq1
817bp
PREDICTED:_transmembrane_protein_C5orf28_[Papilio_polytes]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:3.30 TPM:3.06
1751 A_BomaMG_comp11932_c0_seq1
1522bp
endonuclease-reverse_transcriptase_[Danaus_plexippus]
FPKM:2.07 TPM:1.92
1752 A_BomaMG_comp11934_c0_seq1
393bp
abhydrolase_domain_containing_11_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:2.40 TPM:2.23
1753 A_BomaMG_comp11934_c0_seq2
802bp
abhydrolase_domain_containing_11_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005739 C mitochondrion
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:2.89 TPM:2.68
1754 A_BomaMG_comp11934_c0_seq3
810bp
abhydrolase_domain_containing_11_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005739 C mitochondrion
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:0.00 TPM:0.00
1755 A_BomaMG_comp119359_c0_seq1
264bp
6-phosphofructokinase_1_[Firmicutes_bacterium_CAG:176]
FPKM:2.37 TPM:2.20
1756 A_BomaMG_comp11936_c0_seq1
391bp
FPKM:2.91 TPM:2.70
1757 A_BomaMG_comp11936_c0_seq2
702bp
FPKM:0.00 TPM:0.00
1758 A_BomaMG_comp119370_c0_seq1
396bp
FPKM:1.42 TPM:1.32
1759 A_BomaMG_comp11937_c0_seq1
1006bp
FPKM:2.42 TPM:2.24
1760 A_BomaMG_comp119382_c0_seq1
227bp
MULTISPECIES:_hypothetical_protein_[Mycobacterium_chelonae_group]
FPKM:9.01 TPM:8.34
1761 A_BomaMG_comp119388_c0_seq1
298bp
PREDICTED:_zinc_finger_protein_432_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:4.31 TPM:3.99
1762 A_BomaMG_comp11938_c0_seq1
1367bp
CCHamide_precursor_[Bombyx_mori]
GO:0005179 F hormone activity
GO:0005184 F neuropeptide hormone activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0007218 P neuropeptide signaling pathway
FPKM:2.25 TPM:2.09
1763 A_BomaMG_comp119398_c0_seq1
362bp
PREDICTED:_LOW_QUALITY_PROTEIN:_remodeling_and_spacing_factor_1-like_[Bombyx_mori]
FPKM:4.13 TPM:3.82
1764 A_BomaMG_comp11939_c0_seq1
496bp
FPKM:2.91 TPM:2.70
1765 A_BomaMG_comp1193_c0_seq1
299bp
PREDICTED:_tight_junction_protein_ZO-1_isoform_X9_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005921 C gap junction
GO:0005923 C bicellular tight junction
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0031410 C cytoplasmic vesicle
GO:0070830 P bicellular tight junction assembly
GO:0071277 P cellular response to calcium ion
FPKM:0.00 TPM:0.00
1766 A_BomaMG_comp1193_c0_seq2
299bp
PREDICTED:_tight_junction_protein_ZO-1_isoform_X9_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005921 C gap junction
GO:0005923 C bicellular tight junction
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0031410 C cytoplasmic vesicle
GO:0070830 P bicellular tight junction assembly
GO:0071277 P cellular response to calcium ion
FPKM:1.43 TPM:1.32
1767 A_BomaMG_comp11940_c0_seq1
1122bp
PREDICTED:_zinc_finger_protein_660-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.62 TPM:1.50
1768 A_BomaMG_comp11942_c0_seq1
270bp
GL27032_[Drosophila_persimilis]
FPKM:0.00 TPM:0.00
1769 A_BomaMG_comp11942_c1_seq1
368bp
hypothetical_protein_[Hungatella_hathewayi]
FPKM:1.82 TPM:1.68
1770 A_BomaMG_comp11943_c0_seq1
743bp
FPKM:2.77 TPM:2.57
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