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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

1591

A_BomaMG_comp11825_c0_seq1

1029bp

hypothetical_protein_KGM_01689_[Danaus_plexippus]

FPKM:2.68 TPM:2.48

1592

A_BomaMG_comp118263_c0_seq1

758bp

PREDICTED:_ring_canal_kelch_homolog_[Bombyx_mori]

GO:0003779	F	actin binding
GO:0005737	C	cytoplasm
GO:0005856	C	cytoskeleton

FPKM:3.29 TPM:3.05

1593

A_BomaMG_comp118264_c0_seq1

1621bp

PREDICTED:_serine/threonine-protein_phosphatase_2A_56_kDa_regulatory_subunit_gamma_isoform-like_isoform_X2_[Amyelois_transitella]

GO:0000159	C	protein phosphatase type 2A complex
GO:0005634	C	nucleus
GO:0007165	P	signal transduction
GO:0008601	F	protein phosphatase regulator activity
GO:0034047	P	regulation of phosphoprotein phosphatase activity

FPKM:2.68 TPM:2.48

1594

A_BomaMG_comp11826_c0_seq1

706bp

FPKM:4.13 TPM:3.83

1595

A_BomaMG_comp11826_c1_seq1

428bp

FPKM:1.38 TPM:1.27

1596

A_BomaMG_comp118278_c0_seq1

233bp

FPKM:0.00 TPM:0.00

1597

A_BomaMG_comp1182_c0_seq1

223bp

nicotinamidase_[Hahella_chejuensis]

FPKM:0.00 TPM:0.00

1598

A_BomaMG_comp11830_c0_seq1

1643bp

PREDICTED:_DNA_polymerase_epsilon_catalytic_subunit_A_[Amyelois_transitella]

GO:0000082	P	G1/S transition of mitotic cell cycle
GO:0000166	F	nucleotide binding
GO:0000731	P	DNA synthesis involved in DNA repair
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003682	F	chromatin binding
GO:0003887	F	DNA-directed DNA polymerase activity
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005886	C	plasma membrane
GO:0006260	P	DNA replication
GO:0006281	P	DNA repair
GO:0006287	P	base-excision repair, gap-filling
GO:0006297	P	nucleotide-excision repair, DNA gap filling
GO:0006974	P	cellular response to DNA damage stimulus
GO:0008270	F	zinc ion binding
GO:0008408	F	3'-5' exonuclease activity
GO:0008622	C	epsilon DNA polymerase complex
GO:0016740	F	transferase activity
GO:0016779	F	nucleotidyltransferase activity
GO:0046872	F	metal ion binding
GO:0048568	P	embryonic organ development
GO:0051536	F	iron-sulfur cluster binding
GO:0051539	F	4 iron, 4 sulfur cluster binding
GO:0071897	P	DNA biosynthetic process
GO:0090305	P	nucleic acid phosphodiester bond hydrolysis

FPKM:2.34 TPM:2.16

1599

A_BomaMG_comp118310_c0_seq1

1402bp

PREDICTED:_uncharacterized_protein_LOC105393415_[Plutella_xylostella]

FPKM:2.69 TPM:2.49

1600

A_BomaMG_comp118318_c0_seq1

347bp

FPKM:3.68 TPM:3.41

1601

A_BomaMG_comp118319_c0_seq1

3240bp

hypothetical_protein_KGM_18357_[Danaus_plexippus]

FPKM:2.07 TPM:1.91

1602

A_BomaMG_comp11832_c0_seq1

335bp

hypothetical_protein_[Terrabacter_sp._Root181]

FPKM:4.62 TPM:4.28

1603

A_BomaMG_comp11833_c0_seq1

425bp

FPKM:0.00 TPM:0.00

1604

A_BomaMG_comp11833_c0_seq2

800bp

FPKM:2.79 TPM:2.59

1605

A_BomaMG_comp118352_c0_seq1

553bp

PREDICTED:_LOW_QUALITY_PROTEIN:_protein_sidekick_[Bombyx_mori]

GO:0005887	C	integral component of plasma membrane
GO:0007155	P	cell adhesion
GO:0007275	P	multicellular organism development
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0042675	P	compound eye cone cell differentiation
GO:0046533	P	negative regulation of photoreceptor cell differentiation
GO:0050931	P	pigment cell differentiation
GO:0098595	C	perivitelline space

FPKM:3.10 TPM:2.87

1606

A_BomaMG_comp118355_c0_seq1

390bp

PREDICTED:_adenomatous_polyposis_coli_protein-like_isoform_X1_[Bombyx_mori]

FPKM:4.06 TPM:3.76

1607

A_BomaMG_comp118367_c0_seq1

1430bp

hypothetical_protein_KGM_01092_[Danaus_plexippus]

GO:0000175	F	3'-5'-exoribonuclease activity
GO:0000957	P	mitochondrial RNA catabolic process
GO:0000958	P	mitochondrial mRNA catabolic process
GO:0000962	P	positive regulation of mitochondrial RNA catabolic process
GO:0000964	P	mitochondrial RNA 5'-end processing
GO:0000965	P	mitochondrial RNA 3'-end processing
GO:0003676	F	nucleic acid binding
GO:0003723	F	RNA binding
GO:0004518	F	nuclease activity
GO:0004527	F	exonuclease activity
GO:0004654	F	polyribonucleotide nucleotidyltransferase activity
GO:0005737	C	cytoplasm
GO:0005739	C	mitochondrion
GO:0005758	C	mitochondrial intermembrane space
GO:0006396	P	RNA processing
GO:0006397	P	mRNA processing
GO:0006401	P	RNA catabolic process
GO:0006402	P	mRNA catabolic process
GO:0006810	P	transport
GO:0008266	F	poly(U) RNA binding
GO:0016020	C	membrane
GO:0016740	F	transferase activity
GO:0016779	F	nucleotidyltransferase activity
GO:0016787	F	hydrolase activity
GO:0034046	F	poly(G) binding
GO:0034599	P	cellular response to oxidative stress
GO:0035198	F	miRNA binding
GO:0035458	P	cellular response to interferon-beta
GO:0035927	P	RNA import into mitochondrion
GO:0035928	P	rRNA import into mitochondrion
GO:0043457	P	regulation of cellular respiration
GO:0043631	P	RNA polyadenylation
GO:0044822	F	RNA binding
GO:0045025	C	mitochondrial degradosome
GO:0045926	P	negative regulation of growth
GO:0051260	P	protein homooligomerization
GO:0061014	P	positive regulation of mRNA catabolic process
GO:0070207	P	protein homotrimerization
GO:0070584	P	mitochondrion morphogenesis
GO:0071042	P	nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850	P	regulation of cell cycle
GO:0090503	P	RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222	P	mitochondrial mRNA polyadenylation
GO:2000627	P	positive regulation of miRNA catabolic process
GO:2000772	P	regulation of cellular senescence

FPKM:2.90 TPM:2.69

1608

A_BomaMG_comp11836_c0_seq1

1036bp

PREDICTED:_aldo-keto_reductase_AKR2E4-like_isoform_X1_[Amyelois_transitella]

GO:0006629	P	lipid metabolic process
GO:0008202	P	steroid metabolic process
GO:0016491	F	oxidoreductase activity
GO:0055114	P	obsolete oxidation-reduction process

FPKM:3.05 TPM:2.82

1609

A_BomaMG_comp11837_c0_seq1

381bp

FPKM:1.53 TPM:1.42

1610

A_BomaMG_comp11837_c1_seq1

684bp

FPKM:2.63 TPM:2.43

1611

A_BomaMG_comp11838_c0_seq1

312bp

FPKM:4.90 TPM:4.53

1612

A_BomaMG_comp1183_c1_seq1

416bp

FPKM:1.16 TPM:1.07

1613

A_BomaMG_comp11841_c0_seq1

1251bp

PREDICTED:_sex_determination_protein_fruitless-like_isoform_X3_[Bombyx_mori]

GO:0003677	F	DNA binding
GO:0003680	F	minor groove of adenine-thymine-rich DNA binding
GO:0003700	F	DNA-binding transcription factor activity
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005700	C	polytene chromosome
GO:0005701	C	polytene chromosome chromocenter
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription by RNA polymerase II
GO:0007455	P	eye-antennal disc morphogenesis
GO:0007478	P	leg disc morphogenesis
GO:0019233	P	sensory perception of pain
GO:0061040	P	female gonad morphogenesis

FPKM:1.77 TPM:1.64

1614

A_BomaMG_comp118429_c0_seq1

949bp

RAN_binding_protein_[Bombyx_mori]

GO:0000082	P	G1/S transition of mitotic cell cycle
GO:0005096	F	GTPase activator activity
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005813	C	centrosome
GO:0006405	P	RNA export from nucleus
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0006606	P	protein import into nucleus
GO:0007051	P	spindle organization
GO:0008536	F	small GTPase binding
GO:0043547	P	positive regulation of GTPase activity
GO:0046604	P	positive regulation of mitotic centrosome separation
GO:0046907	P	intracellular transport