SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp118367_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		hypothetical_protein_KGM_01092_[Danaus_plexippus]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000957 P mitochondrial RNA catabolic process
GO:0000958 P mitochondrial mRNA catabolic process
GO:0000962 P positive regulation of mitochondrial RNA catabolic process
GO:0000964 P mitochondrial RNA 5'-end processing
GO:0000965 P mitochondrial RNA 3'-end processing
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004654 F polyribonucleotide nucleotidyltransferase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0006810 P transport
GO:0008266 F poly(U) RNA binding
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0034046 F poly(G) binding
GO:0034599 P cellular response to oxidative stress
GO:0035198 F miRNA binding
GO:0035458 P cellular response to interferon-beta
GO:0035927 P RNA import into mitochondrion
GO:0035928 P rRNA import into mitochondrion
GO:0043457 P regulation of cellular respiration
GO:0043631 P RNA polyadenylation
GO:0044822 F RNA binding
GO:0045025 C mitochondrial degradosome
GO:0045926 P negative regulation of growth
GO:0051260 P protein homooligomerization
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070207 P protein homotrimerization
GO:0070584 P mitochondrion morphogenesis
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850 P regulation of cell cycle
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222 P mitochondrial mRNA polyadenylation
GO:2000627 P positive regulation of miRNA catabolic process
GO:2000772 P regulation of cellular senescence
Transcript
Level		FPKM:2.90 TPM:2.69
ORF Entry
Sequence
(Nucleotide)
TGTGCAGGAAGAAACTTTTCTCTTTGATTCCGCTGGTGAGCATGGTGAGCGTGTCCACCC
TGAGCGCACTGTCGGGCGAGTCGAAGGCGACGGTGCACAGCACCTGCGTCTGTCCGCGCT
GGAACACCGCGCTGCCATGGAGCGGCTCGTACAGCGACACCTGGCAGCTAATATCTCTGA
GCTGATCAAGATGCCGGCCGTCGCATCTCGTGTCAGTCTCGAAGATCATCTCGCGGAATA
TCTGCTTGAGGTTCTCGTTGAAGCAGTCCTGGAGACGGGTCACGTCTATGTTCGTGTCCC
GGAACTGGTTCAGCACGGTCTGTCGTAGATCGGATATGGCGTTATCCCGGGACGTCTTAT
CGTGGGTGAAGTCACTCAATATTTCTCTGATTTTCATAGAAGATAATATTTTGATAGTAT
CAACAACGTTTTGTTCTAGAGGCAGTTGAATTTCATATTCTCTTTTCATTTTACCATGAT
CCTTCTGCAGTTTCTCTATCCCTCTCACAATTTGTTGAGCTTCTTTGGTTCCTAATTTGA
TGGCCTTGAGTAGATCCTGCTGTAGGATGTCAGAGGCGCTACCTTCCAGCATCACTACTA
GATTACTGCTGGTAGCTGTCACAATTAAGTTCAAAACAGACTTCTCCAATTCTTTACGTG
TTGGATTTATTATTAATTCATTGTCAATTTGACCTAATCGAACAGCACCAACAGGGCCAT
TCCACGGCACATCAGAGAGTGCAAGTGCTGCACTTGCCGCATTTATAGCTACTGTTTCAG
GCAAATTCGTTCCATCCATCGCCAACATGTTGCATACTATCTGTGTATCATAGTTGTAGT
TATGCGGGAAGAGCGGTCGTAGAGAACGATCTATTACTCGTGAAGTAAGAATTTCTTTTT
CTGATGGACCCAGTTCTCTCCTAAAAAAATTGGTAGGAATTCGTCCTGCGGCTGCTGCTT
TTTGTCTATAGTCAACTGAGAGTGGTAAGAATGAAGTGGGACTTTGTTTAGCTTTTGACA
CAACAGTTGATAGCACGCTTGTGTTACCGAGAGACACAACACATGCTCCATCTGCGAATC
TTGCGTAACGGCCCGTGGACAATTTCAAGGTGGTCCCGTTAGTAAAAGGAATATCAATTA
CGCCAAGTTTGGCTTGTGATGAGAGAAATCTACAGTAATACCGACTTTTCGTCTTCAATT
TTGTTAATAATATGCATTTTTTATGTAACATTTTCTTGTGTATATGATCTTGAGAGTCAA
AAAGGACACCCGTTATGATATTCGACGTACTGTAGAATTTATGGTTTTAGTTAAAAATTA
ATCTTAATGATTTGTTTACTTTTCATAATAATATCTATATTAAAAGTTCGCCAATTAACG
AAAGTCACTAAAAATAAGTTTAAATTAGACAATAGCAAGCAAAAACTTTG
(1430 bp)

- SilkBase 1999-2023 -