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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1561 A_BomaMG_comp11808_c0_seq1
378bp
PREDICTED:_E3_ubiquitin-protein_ligase_listerin_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
FPKM:4.48 TPM:4.15
1562 A_BomaMG_comp11809_c0_seq1
271bp
PREDICTED:_splicing_factor_3B_subunit_2-like_[Plutella_xylostella]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016032 P viral process
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:5.88 TPM:5.45
1563 A_BomaMG_comp1180_c0_seq1
283bp
hypothetical_protein_[Lachnospiraceae_bacterium_AC2029]
FPKM:0.98 TPM:0.91
1564 A_BomaMG_comp11812_c0_seq1
818bp
PREDICTED:_UPF0585_protein_C16orf13_homolog_A_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.55 TPM:2.36
1565 A_BomaMG_comp11813_c0_seq1
372bp
FPKM:1.60 TPM:1.48
1566 A_BomaMG_comp11813_c1_seq1
1779bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:2.46 TPM:2.27
1567 A_BomaMG_comp11815_c0_seq1
690bp
PREDICTED:_nicotinamide/nicotinic_acid_mononucleotide_adenylyltransferase_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000309 F nicotinamide-nucleotide adenylyltransferase activity
GO:0003824 F catalytic activity
GO:0004515 F nicotinate-nucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0009058 P biosynthetic process
GO:0009435 P NAD biosynthetic process
GO:0009611 P response to wounding
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0019363 P pyridine nucleotide biosynthetic process
GO:0034628 P 'de novo' NAD biosynthetic process from aspartate
FPKM:3.26 TPM:3.02
1568 A_BomaMG_comp11816_c0_seq1
2079bp
hypothetical_protein_KGM_15452_[Danaus_plexippus]
FPKM:2.44 TPM:2.26
1569 A_BomaMG_comp118172_c0_seq1
1260bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:2.38 TPM:2.21
1570 A_BomaMG_comp11817_c0_seq1
515bp
FPKM:2.91 TPM:2.70
1571 A_BomaMG_comp11817_c0_seq2
491bp
FPKM:0.37 TPM:0.34
1572 A_BomaMG_comp11818_c0_seq1
1941bp
PREDICTED:_probable_methyltransferase_TARBP1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006396 P RNA processing
GO:0008168 F methyltransferase activity
GO:0008173 F RNA methyltransferase activity
GO:0016423 F tRNA (guanine) methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
FPKM:2.11 TPM:1.96
1573 A_BomaMG_comp118194_c0_seq1
1505bp
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_34-like_isoform_X1_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:2.17 TPM:2.01
1574 A_BomaMG_comp118197_c0_seq1
487bp
C-Myc-binding_protein_[Operophtera_brumata]
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:3.77 TPM:3.49
1575 A_BomaMG_comp11819_c0_seq1
238bp
FPKM:1.64 TPM:1.52
1576 A_BomaMG_comp11819_c1_seq1
227bp
hypothetical_protein_M437DRAFT_89309_[Aureobasidium_melanogenum_CBS_110374]
FPKM:1.29 TPM:1.19
1577 A_BomaMG_comp1181_c0_seq1
268bp
hypothetical_protein_[Bacillus_firmus]
FPKM:2.27 TPM:2.11
1578 A_BomaMG_comp11820_c0_seq1
988bp
PREDICTED:_RNA-binding_protein_fusilli-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008380 P RNA splicing
GO:0043484 P regulation of RNA splicing
FPKM:1.01 TPM:0.93
1579 A_BomaMG_comp11820_c0_seq2
1122bp
PREDICTED:_RNA-binding_protein_fusilli-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008380 P RNA splicing
GO:0043484 P regulation of RNA splicing
FPKM:1.69 TPM:1.57
1580 A_BomaMG_comp118215_c0_seq1
1601bp
PREDICTED:_unconventional_prefoldin_RPB5_interactor_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001106 F transcription corepressor activity
GO:0001558 P regulation of cell growth
GO:0003682 F chromatin binding
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0009615 P response to virus
GO:0010923 P negative regulation of phosphatase activity
GO:0019212 F phosphatase inhibitor activity
GO:0030425 C dendrite
GO:0042995 C cell projection
GO:0071363 P cellular response to growth factor stimulus
GO:0071383 P cellular response to steroid hormone stimulus
GO:2001243 P negative regulation of intrinsic apoptotic signaling pathway
FPKM:2.68 TPM:2.48
1581 A_BomaMG_comp11821_c0_seq1
873bp
PREDICTED:_LOW_QUALITY_PROTEIN:_E2/E3_hybrid_ubiquitin-protein_ligase_UBE2O_[Bombyx_mori]
FPKM:3.87 TPM:3.58
1582 A_BomaMG_comp11821_c1_seq1
642bp
FPKM:2.65 TPM:2.45
1583 A_BomaMG_comp11822_c0_seq1
1170bp
LOW_QUALITY_PROTEIN:_hypothetical_protein_M514_20815_[Trichuris_suis]
FPKM:2.77 TPM:2.57
1584 A_BomaMG_comp118235_c0_seq1
644bp
hypothetical_protein_[Riemerella_anatipestifer]
FPKM:2.42 TPM:2.24
1585 A_BomaMG_comp11823_c0_seq1
347bp
PREDICTED:_macrophage_erythroblast_attacher_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005826 C actomyosin contractile ring
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007010 P cytoskeleton organization
GO:0007049 P cell cycle
GO:0007155 P cell adhesion
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0033033 P negative regulation of myeloid cell apoptotic process
GO:0043249 P erythrocyte maturation
GO:0048821 P erythrocyte development
GO:0048822 P enucleate erythrocyte development
GO:0051301 P cell division
FPKM:3.07 TPM:2.84
1586 A_BomaMG_comp118248_c0_seq1
1008bp
PREDICTED:_tissue_inhibitor_of_metalloproteases_[Papilio_machaon]
GO:0002020 F protease binding
GO:0004857 F enzyme inhibitor activity
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0007155 P cell adhesion
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007472 P wing disc morphogenesis
GO:0008191 F metalloendopeptidase inhibitor activity
GO:0010033 P response to organic substance
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
GO:0030425 C dendrite
GO:0035202 P tracheal pit formation in open tracheal system
GO:0042331 P phototaxis
GO:0046872 F metal ion binding
GO:0048526 P imaginal disc-derived wing expansion
GO:0048553 P negative regulation of catalytic activity
GO:0051045 P negative regulation of membrane protein ectodomain proteolysis
GO:0060232 P delamination
GO:0071711 P basement membrane organization
FPKM:2.17 TPM:2.01
1587 A_BomaMG_comp11824_c0_seq1
213bp
PREDICTED:_solute_carrier_family_52,_riboflavin_transporter,_member_3_[Bombyx_mori]
FPKM:1.64 TPM:1.52
1588 A_BomaMG_comp11824_c0_seq2
235bp
PREDICTED:_solute_carrier_family_52,_riboflavin_transporter,_member_3_[Bombyx_mori]
FPKM:7.97 TPM:7.38
1589 A_BomaMG_comp118250_c0_seq1
1507bp
PREDICTED:_dnaJ_homolog_subfamily_C_member_13_isoform_X2_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0007032 P endosome organization
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031901 C early endosome membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0070062 C extracellular exosome
GO:0071203 C WASH complex
GO:1902954 P regulation of early endosome to recycling endosome transport
GO:2000641 P regulation of early endosome to late endosome transport
FPKM:2.83 TPM:2.62
1590 A_BomaMG_comp118255_c0_seq1
1313bp
FPKM:2.39 TPM:2.22
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