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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1051 A_BomaMG_comp11379_c0_seq1
622bp
PREDICTED:_uncharacterized_protein_LOC105841951_[Bombyx_mori]
FPKM:3.23 TPM:2.99
1052 A_BomaMG_comp11379_c1_seq1
728bp
FPKM:2.60 TPM:2.41
1053 A_BomaMG_comp1137_c0_seq1
257bp
FPKM:1.71 TPM:1.58
1054 A_BomaMG_comp11380_c0_seq1
1638bp
PREDICTED:_tyrosine--tRNA_ligase,_mitochondrial_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070184 P mitochondrial tyrosyl-tRNA aminoacylation
FPKM:3.37 TPM:3.12
1055 A_BomaMG_comp11381_c0_seq1
621bp
uncharacterized_protein_LOC778477_[Bombyx_mori]
FPKM:4.09 TPM:3.78
1056 A_BomaMG_comp11382_c0_seq1
917bp
putative_GATA_zinc_finger_domain-containing_protein_1_[Danaus_plexippus]
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:4.56 TPM:4.22
1057 A_BomaMG_comp11383_c0_seq1
1297bp
PREDICTED:_YEATS_domain-containing_protein_4_[Papilio_polytes]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007067 P mitotic cell cycle
GO:0008022 F protein C-terminus binding
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0040008 P regulation of growth
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:0045893 P positive regulation of transcription, DNA-templated
FPKM:3.53 TPM:3.27
1058 A_BomaMG_comp11384_c0_seq1
416bp
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_32_isoform_X2_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
FPKM:1.37 TPM:1.27
1059 A_BomaMG_comp11384_c0_seq2
437bp
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_32_isoform_X4_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
FPKM:3.39 TPM:3.14
1060 A_BomaMG_comp113858_c0_seq1
324bp
FPKM:2.60 TPM:2.41
1061 A_BomaMG_comp11386_c0_seq1
2196bp
dnaJ_homolog_dnj-5_[Bombyx_mori]
GO:0001664 F G protein-coupled receptor binding
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0008150 P biological_process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0050780 F dopamine receptor binding
GO:0070062 C extracellular exosome
FPKM:2.99 TPM:2.77
1062 A_BomaMG_comp11387_c0_seq1
3672bp
PREDICTED:_transmembrane_protein_245_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:3.09 TPM:2.86
1063 A_BomaMG_comp113891_c0_seq1
1410bp
WD_repeat-containing_protein_47_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007275 P multicellular organism development
GO:0008150 P biological_process
FPKM:2.78 TPM:2.58
1064 A_BomaMG_comp11390_c0_seq1
1281bp
PREDICTED:_dynactin_subunit_4_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005869 C dynactin complex
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007097 P nuclear migration
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0047485 F protein N-terminus binding
FPKM:2.74 TPM:2.54
1065 A_BomaMG_comp11391_c0_seq1
370bp
PREDICTED:_ran-binding_protein_9_isoform_X3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
FPKM:6.65 TPM:6.16
1066 A_BomaMG_comp11391_c0_seq2
549bp
PREDICTED:_ran-binding_protein_9_isoform_X3_[Bombyx_mori]
FPKM:1.29 TPM:1.20
1067 A_BomaMG_comp11393_c0_seq1
1531bp
PREDICTED:_transmembrane_protein_183_isoform_X2_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:3.43 TPM:3.18
1068 A_BomaMG_comp11394_c0_seq1
550bp
PREDICTED:_LOW_QUALITY_PROTEIN:_probable_phospholipid-transporting_ATPase_VD_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0008360 P regulation of cell shape
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0034220 P ion transmembrane transport
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
FPKM:4.23 TPM:3.92
1069 A_BomaMG_comp11395_c0_seq1
1567bp
RNA_m5u_methyltransferase_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0001510 P RNA methylation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0006396 P RNA processing
GO:0008168 F methyltransferase activity
GO:0008173 F RNA methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0044822 F RNA binding
FPKM:3.93 TPM:3.64
1070 A_BomaMG_comp113967_c0_seq1
925bp
FPKM:2.28 TPM:2.11
1071 A_BomaMG_comp11396_c0_seq1
1656bp
PREDICTED:_rap1_GTPase-GDP_dissociation_stimulator_1-B_[Amyelois_transitella]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0007264 P small GTPase mediated signal transduction
GO:0032471 P negative regulation of endoplasmic reticulum calcium ion concentration
GO:0043547 P positive regulation of GTPase activity
GO:0051561 P positive regulation of mitochondrial calcium ion concentration
GO:0070062 C extracellular exosome
FPKM:3.21 TPM:2.97
1072 A_BomaMG_comp11397_c0_seq1
853bp
PREDICTED:_splicing_factor_U2af_38_kDa_subunit_isoform_X2_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0010906 P regulation of glucose metabolic process
GO:0046872 F metal ion binding
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
FPKM:4.79 TPM:4.44
1073 A_BomaMG_comp11398_c0_seq1
842bp
PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_UBR1-like_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000785 C chromatin
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006342 P heterochromatin assembly
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007141 P male meiosis I
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0032007 P negative regulation of TOR signaling
GO:0033522 P histone H2A ubiquitination
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070728 F leucine binding
GO:0071233 P cellular response to leucine
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
FPKM:3.90 TPM:3.61
1074 A_BomaMG_comp11399_c0_seq1
1823bp
PREDICTED:_active_breakpoint_cluster_region-related_protein_isoform_X3_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005622 C intracellular anatomical structure
GO:0007165 P signal transduction
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0043547 P positive regulation of GTPase activity
FPKM:4.37 TPM:4.05
1075 A_BomaMG_comp11400_c0_seq1
890bp
FPKM:4.20 TPM:3.89
1076 A_BomaMG_comp11402_c0_seq1
584bp
chemosensory_protein_8_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0007552 P metamorphosis
GO:0007610 P behavior
GO:0009615 P response to virus
GO:0045297 P obsolete post-mating behavior
FPKM:2.61 TPM:2.42
1077 A_BomaMG_comp11403_c0_seq1
2094bp
PREDICTED:_sec1_family_domain-containing_protein_2-like_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0008150 P biological_process
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
FPKM:1.96 TPM:1.82
1078 A_BomaMG_comp11404_c0_seq1
1019bp
PREDICTED:_uncharacterized_protein_LOC101743204_[Bombyx_mori]
FPKM:2.06 TPM:1.91
1079 A_BomaMG_comp11405_c0_seq1
327bp
FPKM:2.32 TPM:2.15
1080 A_BomaMG_comp11406_c0_seq1
390bp
PREDICTED:_Bardet-Biedl_syndrome_1_protein_[Bombyx_mori]
FPKM:0.76 TPM:0.71
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