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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1081 A_BomaMG_comp11406_c0_seq2
421bp
PREDICTED:_Bardet-Biedl_syndrome_1_protein_[Bombyx_mori]
FPKM:1.03 TPM:0.96
1082 A_BomaMG_comp11409_c0_seq1
1381bp
PREDICTED:_uncharacterized_protein_LOC101744402_[Bombyx_mori]
GO:0016567 P protein ubiquitination
FPKM:2.37 TPM:2.19
1083 A_BomaMG_comp11409_c1_seq1
389bp
PREDICTED:_uncharacterized_protein_LOC101744402_[Bombyx_mori]
GO:0016567 P protein ubiquitination
FPKM:3.27 TPM:3.02
1084 A_BomaMG_comp1140_c0_seq1
442bp
PREDICTED:_uncharacterized_protein_LOC101737983_isoform_X7_[Bombyx_mori]
FPKM:1.43 TPM:1.33
1085 A_BomaMG_comp114104_c0_seq1
975bp
FPKM:2.43 TPM:2.25
1086 A_BomaMG_comp11414_c0_seq1
366bp
hypothetical_protein_KGM_17578_[Danaus_plexippus]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
FPKM:3.12 TPM:2.89
1087 A_BomaMG_comp11415_c0_seq1
385bp
PREDICTED:_U4/U6.U5_tri-snRNP-associated_protein_1_isoform_X2_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000481 P maturation of 5S rRNA
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0007050 P regulation of cell cycle
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0044822 F RNA binding
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0045585 P positive regulation of cytotoxic T cell differentiation
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071013 C catalytic step 2 spliceosome
GO:0097193 P intrinsic apoptotic signaling pathway
FPKM:3.00 TPM:2.78
1088 A_BomaMG_comp11417_c0_seq1
1225bp
PREDICTED:_integrator_complex_subunit_1-like_[Bombyx_mori]
GO:0001832 P blastocyst growth
GO:0001833 P inner cell mass cell proliferation
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016180 P snRNA processing
GO:0031965 C nuclear membrane
GO:0032039 C integrator complex
GO:0034474 P U2 snRNA 3'-end processing
GO:0043066 P negative regulation of apoptotic process
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
FPKM:1.72 TPM:1.59
1089 A_BomaMG_comp114183_c0_seq1
926bp
PREDICTED:_ubiquitin_conjugation_factor_E4_B_isoform_X2_[Amyelois_transitella]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0003222 P ventricular trabecula myocardium morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006513 P protein monoubiquitination
GO:0008626 P granzyme-mediated apoptotic signaling pathway
GO:0009411 P response to UV
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0031175 P neuron projection development
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034976 P response to endoplasmic reticulum stress
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044257 P cellular protein catabolic process
GO:0051082 F unfolded protein binding
GO:0051117 F ATPase binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
FPKM:2.55 TPM:2.36
1090 A_BomaMG_comp11418_c0_seq1
1547bp
PREDICTED:_proton-coupled_amino_acid_transporter_4-like_[Bombyx_mori]
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:1.91 TPM:1.77
1091 A_BomaMG_comp11419_c0_seq1
686bp
FPKM:0.56 TPM:0.52
1092 A_BomaMG_comp11419_c0_seq2
627bp
FPKM:1.34 TPM:1.24
1093 A_BomaMG_comp1141_c0_seq1
432bp
PREDICTED:_serine/threonine-protein_phosphatase_6_regulatory_subunit_2_[Nelumbo_nucifera]
FPKM:1.49 TPM:1.38
1094 A_BomaMG_comp114208_c0_seq1
3369bp
PREDICTED:_BAH_and_coiled-coil_domain-containing_protein_1_isoform_X3_[Amyelois_transitella]
GO:0000785 C chromatin
GO:0000976 F transcription cis-regulatory region binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005677 C chromatin silencing complex
GO:0005694 C chromosome
GO:0006342 P heterochromatin assembly
GO:0007275 P multicellular organism development
GO:0007560 P imaginal disc morphogenesis
GO:0030154 P cell differentiation
GO:0031507 P heterochromatin assembly
FPKM:2.50 TPM:2.32
1095 A_BomaMG_comp11420_c0_seq1
548bp
FPKM:2.22 TPM:2.06
1096 A_BomaMG_comp114221_c0_seq1
321bp
PREDICTED:_poly(A)_RNA_polymerase_GLD2-like,_partial_[Tinamus_guttatus]
FPKM:0.97 TPM:0.89
1097 A_BomaMG_comp114229_c0_seq1
783bp
FPKM:2.76 TPM:2.55
1098 A_BomaMG_comp11422_c0_seq1
391bp
FPKM:2.43 TPM:2.25
1099 A_BomaMG_comp11423_c0_seq1
1391bp
cyclin-dependent_kinase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002088 P lens development in camera-type eye
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0009636 P response to toxic substance
GO:0015030 C Cajal body
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030332 F cyclin binding
GO:0031100 P animal organ regeneration
GO:0032355 P response to estradiol
GO:0032403 F protein-containing complex binding
GO:0032869 P cellular response to insulin stimulus
GO:0042493 P response to xenobiotic stimulus
GO:0043231 C intracellular membrane-bounded organelle
GO:0045471 P response to ethanol
GO:0046686 P response to cadmium ion
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0051591 P response to cAMP
GO:0051602 P response to electrical stimulus
GO:0051726 P regulation of cell cycle
FPKM:1.48 TPM:1.37
1100 A_BomaMG_comp11427_c0_seq1
255bp
cytochrome_C-552_[Bradyrhizobium_diazoefficiens]
FPKM:3.94 TPM:3.65
1101 A_BomaMG_comp11428_c0_seq1
1055bp
PREDICTED:_focadhesin_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005925 C focal adhesion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
FPKM:1.86 TPM:1.72
1102 A_BomaMG_comp11429_c0_seq1
1166bp
FPKM:1.89 TPM:1.75
1103 A_BomaMG_comp1142_c0_seq1
392bp
FPKM:1.61 TPM:1.49
1104 A_BomaMG_comp114309_c0_seq1
533bp
FPKM:2.51 TPM:2.32
1105 A_BomaMG_comp11431_c0_seq1
543bp
PREDICTED:_telomerase-binding_protein_EST1A_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000333 C telomerase catalytic core complex
GO:0000723 P telomere maintenance
GO:0000781 C chromosome, telomeric region
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016787 F hydrolase activity
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0043021 F ribonucleoprotein complex binding
GO:0046872 F metal ion binding
GO:0070034 F telomerase RNA binding
GO:0070182 F DNA polymerase binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:1904354 P negative regulation of telomere capping
FPKM:2.63 TPM:2.43
1106 A_BomaMG_comp114323_c0_seq1
601bp
PREDICTED:_neuroblastoma-amplified_sequence-like_[Bombyx_mori]
FPKM:3.39 TPM:3.14
1107 A_BomaMG_comp11432_c0_seq1
205bp
hypothetical_protein_HL42_6216_[Trichophyton_rubrum]
FPKM:0.97 TPM:0.90
1108 A_BomaMG_comp11432_c0_seq2
235bp
PREDICTED:_uncharacterized_protein_LOC106131712_[Amyelois_transitella]
FPKM:2.85 TPM:2.64
1109 A_BomaMG_comp114333_c0_seq1
580bp
FPKM:2.65 TPM:2.45
1110 A_BomaMG_comp11433_c0_seq1
404bp
PREDICTED:_arrestin_domain-containing_protein_2-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0008150 P biological_process
GO:0031410 C cytoplasmic vesicle
FPKM:2.59 TPM:2.40
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