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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

3931

A_BomaMSG_c14209_g1_i1

276bp

FERM,_RhoGEF_and_pleckstrin_domain-containing_protein_2_isoform_X5_[Bombyx_mori]

GO:0005085	F	guanyl-nucleotide exchange factor activity
GO:0005089	F	guanyl-nucleotide exchange factor activity
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0005856	C	cytoskeleton
GO:0005886	C	plasma membrane
GO:0007275	P	multicellular organism development
GO:0007416	P	synapse assembly
GO:0008092	F	cytoskeletal protein binding
GO:0016020	C	membrane
GO:0019898	C	extrinsic component of membrane
GO:0030054	C	cell junction
GO:0030175	C	filopodium
GO:0030425	C	dendrite
GO:0030676	F	guanyl-nucleotide exchange factor activity
GO:0031234	C	extrinsic component of cytoplasmic side of plasma membrane
GO:0035023	P	regulation of Rho protein signal transduction
GO:0042995	C	cell projection
GO:0043005	C	neuron projection
GO:0043197	C	dendritic spine
GO:0043547	P	positive regulation of GTPase activity
GO:0045202	C	synapse
GO:0048365	F	small GTPase binding
GO:0048813	P	dendrite morphogenesis

FPKM:3.19 TPM:1.42

3932

A_BomaMSG_c14212_g1_i1

394bp

retinal_rod_rhodopsin-sensitive_cGMP_3',5'-cyclic_phosphodiesterase_subunit_delta_isoform_X2_[Bombyx_mori]

GO:0004114	F	3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005095	F	GTPase inhibitor activity
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0005856	C	cytoskeleton
GO:0007601	P	visual perception
GO:0008152	P	metabolic process
GO:0016020	C	membrane
GO:0017137	F	small GTPase binding
GO:0030659	C	cytoplasmic vesicle membrane
GO:0031410	C	cytoplasmic vesicle
GO:0034260	P	negative regulation of GTPase activity
GO:0042995	C	cell projection
GO:0050896	P	response to stimulus

FPKM:8.54 TPM:3.82

3933

A_BomaMSG_c14213_g1_i1

280bp

FPKM:8.76 TPM:3.91

3934

A_BomaMSG_c14214_g1_i1

506bp

Mutant_cadherin_[Operophtera_brumata]

FPKM:4.16 TPM:1.86

3935

A_BomaMSG_c14216_g1_i1

279bp

WD_repeat-containing_protein_43_[Bombyx_mori]

FPKM:5.71 TPM:2.55

3936

A_BomaMSG_c14217_g1_i1

862bp

FPKM:5.39 TPM:2.41

3937

A_BomaMSG_c14218_g1_i1

235bp

protein_EFR3_homolog_cmp44E_[Bombyx_mori]

FPKM:3.11 TPM:1.39

3938

A_BomaMSG_c1421_g1_i1

512bp

FPKM:6.13 TPM:2.74

3939

A_BomaMSG_c14220_g1_i1

340bp

FPKM:3.89 TPM:1.74

3940

A_BomaMSG_c14222_g1_i1

496bp

protein_cappuccino_isoform_X2_[Bombyx_mori]

FPKM:2.53 TPM:1.13

3941

A_BomaMSG_c14223_g1_i1

541bp

FPKM:4.48 TPM:2.00

3942

A_BomaMSG_c14224_g1_i1

206bp

golgin_IMH1_[Bombyx_mori]

FPKM:0.00 TPM:0.00

3943

A_BomaMSG_c14224_g2_i1

221bp

golgin_IMH1_[Bombyx_mori]

FPKM:3.68 TPM:1.64

3944

A_BomaMSG_c14225_g1_i1

288bp

G_kinase-anchoring_protein_1_[Bombyx_mori]

FPKM:4.37 TPM:1.95

3945

A_BomaMSG_c14226_g1_i1

559bp

tetratricopeptide_repeat_protein_7B_[Bombyx_mori]

FPKM:4.77 TPM:2.13

3946

A_BomaMSG_c14228_g1_i1

412bp

hypothetical_protein_1_-_cabbage_looper_transposon_TED_(fragment)

FPKM:1.54 TPM:0.69

3947

A_BomaMSG_c14229_g1_i1

249bp

arylsulfatase_B_[Bombyx_mori]

GO:0003824	F	catalytic activity
GO:0003943	F	N-acetylgalactosamine-4-sulfatase activity
GO:0004065	F	arylsulfatase activity
GO:0005739	C	mitochondrion
GO:0005764	C	lysosome
GO:0005791	C	rough endoplasmic reticulum
GO:0005794	C	Golgi apparatus
GO:0006914	P	autophagy
GO:0007417	P	central nervous system development
GO:0007584	P	response to nutrient
GO:0008152	P	metabolic process
GO:0008484	F	sulfuric ester hydrolase activity
GO:0009268	P	response to pH
GO:0009986	C	cell surface
GO:0010632	P	regulation of epithelial cell migration
GO:0010976	P	positive regulation of neuron projection development
GO:0016787	F	hydrolase activity
GO:0043627	P	response to estrogen
GO:0046872	F	metal ion binding
GO:0051597	P	response to methylmercury
GO:0061580	P	colon epithelial cell migration
GO:0070062	C	extracellular exosome

FPKM:3.36 TPM:1.50

3948

A_BomaMSG_c14230_g1_i1

217bp

FPKM:5.82 TPM:2.60

3949

A_BomaMSG_c14231_g1_i1

677bp

polycomb_protein_Asx_[Bombyx_mori]

FPKM:6.13 TPM:2.74

3950

A_BomaMSG_c14232_g1_i1

2302bp

dsp_protein_[Bombyx_mori]

GO:0000122	P	negative regulation of transcription by RNA polymerase II
GO:0003677	F	DNA binding
GO:0003697	F	single-stranded DNA binding
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005694	C	chromosome
GO:0005700	C	polytene chromosome
GO:0006268	P	DNA unwinding involved in DNA replication
GO:0006338	P	chromatin remodeling
GO:0007379	P	segment specification
GO:0008134	F	transcription factor binding
GO:0008301	F	DNA binding, bending
GO:0008348	P	negative regulation of antimicrobial humoral response
GO:0017025	F	TBP-class protein binding
GO:0017055	P	negative regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0032502	P	developmental process
GO:0035218	P	leg disc development
GO:0043388	P	positive regulation of DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated

FPKM:28.61 TPM:12.79

3951

A_BomaMSG_c14233_g1_i1

502bp

lethal(2)neighbour_of_tid_protein_2_[Helicoverpa_armigera]

GO:0005783	C	endoplasmic reticulum
GO:0005789	C	endoplasmic reticulum membrane
GO:0007275	P	multicellular organism development
GO:0008152	P	metabolic process
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016758	F	hexosyltransferase activity
GO:0030176	C	integral component of endoplasmic reticulum membrane

FPKM:6.88 TPM:3.08

3952

A_BomaMSG_c14234_g1_i1

440bp

integrator_complex_subunit_1-like_[Bombyx_mori]

GO:0001832	P	blastocyst growth
GO:0001833	P	inner cell mass cell proliferation
GO:0003674	F	molecular_function
GO:0005634	C	nucleus
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016180	P	snRNA processing
GO:0031965	C	nuclear membrane
GO:0032039	C	integrator complex
GO:0034474	P	U2 snRNA 3'-end processing
GO:0043066	P	negative regulation of apoptotic process
GO:0043154	P	negative regulation of cysteine-type endopeptidase activity involved in apoptotic process