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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

3901

A_BomaMSG_c14177_g1_i2

552bp

arf-GAP_domain_and_FG_repeat-containing_protein_1_isoform_X2_[Bombyx_mori]

GO:0001675	P	acrosome assembly
GO:0003677	F	DNA binding
GO:0005096	F	GTPase activator activity
GO:0005634	C	nucleus
GO:0006810	P	transport
GO:0007275	P	multicellular organism development
GO:0007283	P	spermatogenesis
GO:0007289	P	spermatid nucleus differentiation
GO:0016023	C	cytoplasmic vesicle
GO:0030154	P	cell differentiation
GO:0031410	C	cytoplasmic vesicle
GO:0042995	C	cell projection
GO:0043025	C	neuronal cell body
GO:0043231	C	intracellular membrane-bounded organelle
GO:0043547	P	positive regulation of GTPase activity
GO:0045109	P	intermediate filament organization
GO:0046872	F	metal ion binding

FPKM:1.19 TPM:0.53

3902

A_BomaMSG_c14179_g1_i1

299bp

FPKM:2.70 TPM:1.21

3903

A_BomaMSG_c14180_g1_i1

375bp

cadherin-87A_[Bombyx_mori]

GO:0005509	F	calcium ion binding
GO:0005886	C	plasma membrane
GO:0005887	C	integral component of plasma membrane
GO:0007155	P	cell adhesion
GO:0007156	P	homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016339	P	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0044331	P	cell-cell adhesion mediated by cadherin
GO:0046872	F	metal ion binding

FPKM:5.08 TPM:2.27

3904

A_BomaMSG_c14181_g1_i1

304bp

FPKM:7.41 TPM:3.31

3905

A_BomaMSG_c14182_g1_i1

571bp

anaphase_promoting_complex_subunit_10_[Bombyx_mori]

GO:0005680	C	anaphase-promoting complex
GO:0007049	P	cell cycle
GO:0007067	P	mitotic cell cycle
GO:0007092	P	positive regulation of ubiquitin protein ligase activity
GO:0007113	P	endomitotic cell cycle
GO:0008054	P	anaphase-promoting complex-dependent catabolic process
GO:0019233	P	sensory perception of pain
GO:0022008	P	neurogenesis
GO:0030071	P	regulation of mitotic metaphase/anaphase transition
GO:0031145	P	anaphase-promoting complex-dependent catabolic process
GO:0051301	P	cell division
GO:0070979	P	protein K11-linked ubiquitination
GO:0090302	F	ubiquitin protein ligase activity

FPKM:6.40 TPM:2.86

3906

A_BomaMSG_c14183_g1_i1

489bp

uncharacterized_protein_LOC101745877_isoform_X2_[Bombyx_mori]

GO:0000976	F	transcription cis-regulatory region binding
GO:0003700	F	DNA-binding transcription factor activity
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005737	C	cytoplasm
GO:0006357	P	regulation of transcription by RNA polymerase II
GO:0045893	P	positive regulation of transcription, DNA-templated

FPKM:1.98 TPM:0.89

3907

A_BomaMSG_c14184_g1_i1

248bp

FPKM:8.16 TPM:3.65

3908

A_BomaMSG_c14186_g1_i1

263bp

dmX-like_protein_2_[Bombyx_mori]

FPKM:10.05 TPM:4.49

3909

A_BomaMSG_c14186_g2_i1

223bp

dmX-like_protein_2_isoform_X4_[Helicoverpa_armigera]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0008150	P	biological_process

FPKM:6.28 TPM:2.81

3910

A_BomaMSG_c14187_g1_i1

499bp

death-inducer_obliterator_1_isoform_X2_[Bombyx_mori]

FPKM:13.07 TPM:5.84

3911

A_BomaMSG_c14187_g1_i2

513bp

death-inducer_obliterator_1_isoform_X2_[Bombyx_mori]

FPKM:0.60 TPM:0.27

3912

A_BomaMSG_c14190_g1_i1

272bp

endonuclease-reverse_transcriptase_[Bombyx_mori]

GO:0003964	F	RNA-directed DNA polymerase activity
GO:0004518	F	nuclease activity
GO:0004519	F	endonuclease activity
GO:0006278	P	RNA-dependent DNA biosynthetic process
GO:0008152	P	metabolic process
GO:0016740	F	transferase activity
GO:0016779	F	nucleotidyltransferase activity
GO:0016787	F	hydrolase activity
GO:0046872	F	metal ion binding
GO:0090305	P	nucleic acid phosphodiester bond hydrolysis

FPKM:1.64 TPM:0.73

3913

A_BomaMSG_c14190_g1_i2

203bp

endonuclease-reverse_transcriptase_[Bombyx_mori]

FPKM:1.21 TPM:0.54

3914

A_BomaMSG_c14191_g1_i1

224bp

FPKM:1.77 TPM:0.79

3915

A_BomaMSG_c14192_g1_i1

233bp

FPKM:8.75 TPM:3.91

3916

A_BomaMSG_c14193_g1_i1

465bp

FPKM:3.42 TPM:1.53

3917

A_BomaMSG_c14194_g1_i1

257bp

uncharacterized_protein_LOC110385166_[Bombyx_mori]

FPKM:4.99 TPM:2.23

3918

A_BomaMSG_c14195_g1_i1

1007bp

gastrula_zinc_finger_protein_XlCGF52.1_[Bombyx_mori]

GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	DNA-binding transcription factor activity
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046872	F	metal ion binding

FPKM:3.38 TPM:1.51

3919

A_BomaMSG_c14196_g1_i1

205bp

DNA_repair_protein_complementing_XP-A_cells_homolog_[Bombyx_mori]

GO:0000110	C	nucleotide-excision repair factor 1 complex
GO:0000715	P	nucleotide-excision repair, DNA damage recognition
GO:0003677	F	DNA binding
GO:0003684	F	damaged DNA binding
GO:0005634	C	nucleus
GO:0006281	P	DNA repair
GO:0006284	P	base-excision repair
GO:0006289	P	nucleotide-excision repair
GO:0006974	P	cellular response to DNA damage stimulus
GO:0033683	P	nucleotide-excision repair, DNA incision
GO:0046872	F	metal ion binding
GO:0070914	P	UV-damage excision repair
GO:1901255	P	nucleotide-excision repair involved in interstrand cross-link repair

FPKM:6.93 TPM:3.09

3920

A_BomaMSG_c14197_g1_i1

324bp

histone-lysine_N-methyltransferase_SETMAR_[Bombyx_mori]

GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0005694	C	chromosome
GO:0008168	F	methyltransferase activity
GO:0008270	F	zinc ion binding
GO:0016568	P	chromatin organization
GO:0016740	F	transferase activity
GO:0018024	F	histone-lysine N-methyltransferase activity
GO:0032259	P	methylation
GO:0034968	P	histone lysine methylation
GO:0046872	F	metal ion binding

FPKM:1.94 TPM:0.87

3921

A_BomaMSG_c14197_g1_i2

508bp

histone-lysine_N-methyltransferase_SETMAR_[Bombyx_mori]

GO:0000122	P	negative regulation of transcription by RNA polymerase II
GO:0002039	F	p53 binding
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005694	C	chromosome
GO:0006306	P	DNA methylation
GO:0008168	F	methyltransferase activity
GO:0008270	F	zinc ion binding
GO:0009790	P	embryo development
GO:0016279	F	protein-lysine N-methyltransferase activity
GO:0016568	P	chromatin organization
GO:0016571	P	histone methylation
GO:0016740	F	transferase activity
GO:0018024	F	histone-lysine N-methyltransferase activity
GO:0018026	P	peptidyl-lysine monomethylation
GO:0018027	P	peptidyl-lysine dimethylation
GO:0032259	P	methylation
GO:0034968	P	histone lysine methylation
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046872	F	metal ion binding
GO:0046974	F	histone methyltransferase activity (H3-K9 specific)
GO:0046976	F	histone methyltransferase activity (H3-K27 specific)
GO:0051567	P	histone H3-K9 methylation
GO:0060992	P	response to fungicide
GO:0070734	P	histone H3-K27 methylation
GO:0070742	F	C2H2 zinc finger domain binding
GO:1901796	P	regulation of signal transduction by p53 class mediator