SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/42653
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3961 A_BomaMSG_c14243_g1_i1
304bp
PREDICTED:_gastrula_zinc_finger_protein_XlCGF28.1-like_isoform_X1_[Papilio_polytes]
GO:0001702 P gastrulation with mouth forming second
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007398 P ectoderm development
GO:0036498 P IRE1-mediated unfolded protein response
GO:0045786 P negative regulation of cell cycle
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903955 P positive regulation of protein targeting to mitochondrion
FPKM:3.49 TPM:1.56
3962 A_BomaMSG_c14244_g1_i1
1117bp
dystroglycan_isoform_X2_[Bombyx_mori]
GO:0002011 P morphogenesis of an epithelial sheet
GO:0002162 F dystroglycan binding
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005913 C adherens junction
GO:0005925 C focal adhesion
GO:0006509 P membrane protein ectodomain proteolysis
GO:0006607 P NLS-bearing protein import into nucleus
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0008307 F structural constituent of muscle
GO:0009279 C cell outer membrane
GO:0010470 P regulation of gastrulation
GO:0010717 P regulation of epithelial to mesenchymal transition
GO:0014044 P Schwann cell development
GO:0015631 F tubulin binding
GO:0016010 C dystrophin-associated glycoprotein complex
GO:0016011 C dystroglycan complex
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0016323 C basolateral plasma membrane
GO:0016340 P calcium-dependent cell-matrix adhesion
GO:0017166 F vinculin binding
GO:0019048 P modulation by virus of host process
GO:0021682 P nerve maturation
GO:0022011 P myelination in peripheral nervous system
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030175 C filopodium
GO:0030336 P negative regulation of cell migration
GO:0032403 F protein-containing complex binding
GO:0033268 C node of Ranvier
GO:0034453 P microtubule anchoring
GO:0042169 F SH2 domain binding
GO:0042383 C sarcolemma
GO:0042802 F identical protein binding
GO:0043034 C costamere
GO:0043409 P negative regulation of MAPK cascade
GO:0043434 P response to peptide hormone
GO:0045121 C membrane raft
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0051393 F alpha-actinin binding
GO:0051898 P negative regulation of protein kinase B signaling
GO:0060441 P epithelial tube branching involved in lung morphogenesis
GO:0060445 P branching involved in salivary gland morphogenesis
GO:0070062 C extracellular exosome
GO:0070938 C contractile ring
GO:0071679 P commissural neuron axon guidance
GO:0071711 P basement membrane organization
GO:1904261 P positive regulation of basement membrane assembly involved in embryonic body morphogenesis
FPKM:3.27 TPM:1.46
3963 A_BomaMSG_c14245_g1_i1
475bp
jmjC_domain-containing_histone_demethylation_protein_1_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0019005 C SCF ubiquitin ligase complex
GO:0019233 P sensory perception of pain
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031519 C PcG protein complex
GO:0033522 P histone H2A ubiquitination
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
FPKM:6.83 TPM:3.05
3964 A_BomaMSG_c14246_g1_i1
603bp
FPKM:3.27 TPM:1.46
3965 A_BomaMSG_c14248_g1_i1
338bp
FPKM:3.22 TPM:1.44
3966 A_BomaMSG_c14249_g1_i1
243bp
FPKM:2.14 TPM:0.96
3967 A_BomaMSG_c14250_g1_i1
223bp
ubiquitin-protein_ligase_E3C_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0000502 C proteasome complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
FPKM:3.59 TPM:1.60
3968 A_BomaMSG_c14250_g2_i1
536bp
ubiquitin-protein_ligase_E3C_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0000502 C proteasome complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
FPKM:1.39 TPM:0.62
3969 A_BomaMSG_c14252_g1_i1
522bp
folliculin-interacting_protein_2_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001932 P regulation of protein phosphorylation
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0031334 P positive regulation of protein-containing complex assembly
GO:0033138 P positive regulation of peptidyl-serine phosphorylation
FPKM:3.98 TPM:1.78
3970 A_BomaMSG_c14253_g1_i1
408bp
uncharacterized_protein_LOC101747221_isoform_X2_[Bombyx_mori]
FPKM:2.61 TPM:1.16
3971 A_BomaMSG_c14254_g1_i1
375bp
ephrin_type-B_receptor_1-B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005003 F ephrin receptor activity
GO:0005004 F GPI-linked ephrin receptor activity
GO:0005524 F ATP binding
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0010717 P regulation of epithelial to mesenchymal transition
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0032956 P regulation of actin cytoskeleton organization
GO:0043087 P regulation of GTPase activity
GO:0048013 P ephrin receptor signaling pathway
GO:0051893 P regulation of focal adhesion assembly
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:0097155 P fasciculation of sensory neuron axon
GO:0097156 P fasciculation of motor neuron axon
FPKM:2.39 TPM:1.07
3972 A_BomaMSG_c14255_g1_i1
216bp
FPKM:0.98 TPM:0.44
3973 A_BomaMSG_c14256_g1_i1
327bp
FPKM:1.52 TPM:0.68
3974 A_BomaMSG_c14257_g1_i1
403bp
LOW_QUALITY_PROTEIN:_adhesion_G_protein-coupled_receptor_A3_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0009897 C external side of plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:2.39 TPM:1.07
3975 A_BomaMSG_c14258_g1_i1
370bp
FPKM:5.50 TPM:2.46
3976 A_BomaMSG_c14259_g1_i1
317bp
FPKM:1.21 TPM:0.54
3977 A_BomaMSG_c14259_g2_i1
333bp
FPKM:1.84 TPM:0.82
3978 A_BomaMSG_c1425_g1_i1
227bp
FPKM:2.56 TPM:1.14
3979 A_BomaMSG_c14260_g1_i1
334bp
FPKM:2.19 TPM:0.98
3980 A_BomaMSG_c14260_g2_i1
229bp
FPKM:1.67 TPM:0.74
3981 A_BomaMSG_c14261_g1_i1
355bp
LETM1_domain-containing_protein_1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043022 F ribosome binding
FPKM:4.59 TPM:2.05
3982 A_BomaMSG_c14262_g1_i1
996bp
FPKM:2.94 TPM:1.32
3983 A_BomaMSG_c14263_g1_i1
257bp
fumarylacetoacetase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004334 F fumarylacetoacetase activity
GO:0005575 C cellular_component
GO:0006559 P L-phenylalanine catabolic process
GO:0006572 P tyrosine catabolic process
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0009072 P aromatic amino acid family metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:3.74 TPM:1.67
3984 A_BomaMSG_c14264_g1_i1
256bp
FPKM:1.89 TPM:0.84
3985 A_BomaMSG_c14266_g1_i1
311bp
endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:2.09 TPM:0.93
3986 A_BomaMSG_c14267_g1_i1
248bp
FPKM:6.79 TPM:3.03
3987 A_BomaMSG_c14268_g1_i1
595bp
ubiquitin_carboxyl-terminal_hydrolase_34_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:3.48 TPM:1.55
3988 A_BomaMSG_c14269_g1_i1
312bp
FPKM:9.95 TPM:4.44
3989 A_BomaMSG_c1426_g1_i1
308bp
FPKM:0.42 TPM:0.19
3990 A_BomaMSG_c14270_g1_i1
353bp
hypothetical_protein_KGM_215447_[Danaus_plexippus_plexippus]
FPKM:2.32 TPM:1.04
previous next from show/42653

- SilkBase 1999-2023 -