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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3451 A_BomaMSG_c13689_g1_i1
221bp
uncharacterized_protein_LOC101743413_isoform_X3_[Bombyx_mori]
FPKM:5.52 TPM:2.47
3452 A_BomaMSG_c13690_g1_i1
463bp
amyloid_beta_A4_precursor_protein-binding_family_A_member_2_isoform_X10_[Bombyx_mori]
FPKM:2.79 TPM:1.25
3453 A_BomaMSG_c13691_g1_i1
453bp
FPKM:3.11 TPM:1.39
3454 A_BomaMSG_c13692_g1_i1
203bp
FPKM:1.19 TPM:0.53
3455 A_BomaMSG_c13693_g1_i1
795bp
syntaxin-17_isoform_X1_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0000421 C autophagosome membrane
GO:0005484 F SNAP receptor activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006906 P vesicle fusion
GO:0006914 P autophagy
GO:0007030 P Golgi organization
GO:0012505 C endomembrane system
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0019901 F protein kinase binding
GO:0019903 F protein phosphatase binding
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0030868 C smooth endoplasmic reticulum membrane
GO:0030897 C HOPS complex
GO:0031201 C SNARE complex
GO:0031410 C cytoplasmic vesicle
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0034497 P protein localization to phagophore assembly site
GO:0044233 C mitochondria-associated endoplasmic reticulum membrane
GO:0048278 P vesicle docking
GO:0097111 P endoplasmic reticulum-Golgi intermediate compartment organization
GO:0097352 P autophagosome maturation
FPKM:1.57 TPM:0.70
3456 A_BomaMSG_c13695_g1_i1
243bp
FPKM:1.43 TPM:0.64
3457 A_BomaMSG_c13695_g2_i1
226bp
FPKM:1.73 TPM:0.77
3458 A_BomaMSG_c13696_g1_i1
413bp
putative_RNA_polymerase_II_subunit_B1_CTD_phosphatase_RPAP2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004721 F phosphoprotein phosphatase activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0009301 P snRNA transcription
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
FPKM:0.60 TPM:0.27
3459 A_BomaMSG_c13696_g1_i2
492bp
putative_RNA_polymerase_II_subunit_B1_CTD_phosphatase_RPAP2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004721 F phosphoprotein phosphatase activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0009301 P snRNA transcription
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
FPKM:3.47 TPM:1.55
3460 A_BomaMSG_c13697_g1_i1
260bp
FPKM:4.25 TPM:1.90
3461 A_BomaMSG_c13698_g1_i1
279bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.56 TPM:0.70
3462 A_BomaMSG_c13699_g1_i1
224bp
FPKM:3.54 TPM:1.58
3463 A_BomaMSG_c13699_g2_i1
396bp
FPKM:1.91 TPM:0.86
3464 A_BomaMSG_c1369_g1_i1
309bp
FPKM:5.49 TPM:2.45
3465 A_BomaMSG_c136_g1_i1
383bp
FPKM:3.46 TPM:1.55
3466 A_BomaMSG_c13700_g1_i1
312bp
FPKM:4.14 TPM:1.85
3467 A_BomaMSG_c13702_g1_i1
441bp
FPKM:3.15 TPM:1.41
3468 A_BomaMSG_c13702_g1_i2
278bp
FPKM:0.00 TPM:0.00
3469 A_BomaMSG_c13702_g1_i3
342bp
FPKM:0.48 TPM:0.22
3470 A_BomaMSG_c13704_g1_i1
265bp
FPKM:2.91 TPM:1.30
3471 A_BomaMSG_c13705_g1_i1
298bp
protein_lingerer_isoform_X1_[Bombyx_mori]
FPKM:3.63 TPM:1.62
3472 A_BomaMSG_c13706_g1_i1
330bp
FPKM:1.12 TPM:0.50
3473 A_BomaMSG_c13708_g1_i1
208bp
uncharacterized_protein_LOC101744149_[Bombyx_mori]
FPKM:9.92 TPM:4.43
3474 A_BomaMSG_c1370_g1_i1
561bp
FPKM:3.85 TPM:1.72
3475 A_BomaMSG_c13711_g1_i1
619bp
nucleolar_protein_11_[Bombyx_mori]
FPKM:4.45 TPM:1.99
3476 A_BomaMSG_c13712_g1_i1
486bp
vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
FPKM:3.60 TPM:1.61
3477 A_BomaMSG_c13713_g1_i1
320bp
golgin_subfamily_A_member_5_isoform_X2_[Bombyx_mori]
GO:0000137 C Golgi cis cisterna
GO:0000138 C Golgi trans cisterna
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0005515 F protein binding
GO:0005794 C Golgi apparatus
GO:0005797 C Golgi medial cisterna
GO:0005801 C cis-Golgi network
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017137 F small GTPase binding
GO:0030663 C COPI-coated vesicle membrane
GO:0030674 F protein-macromolecule adaptor activity
GO:0031985 C Golgi cisterna
GO:0042803 F protein homodimerization activity
GO:0048193 P Golgi vesicle transport
FPKM:3.56 TPM:1.59
3478 A_BomaMSG_c13714_g1_i1
416bp
FPKM:3.29 TPM:1.47
3479 A_BomaMSG_c13715_g1_i1
290bp
unconventional_myosin-IXa_isoform_X2_[Bombyx_mori]
FPKM:5.32 TPM:2.38
3480 A_BomaMSG_c13717_g1_i1
643bp
talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0002576 P platelet degranulation
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005925 C focal adhesion
GO:0006928 P movement of cell or subcellular component
GO:0006936 P muscle contraction
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007043 P cell-cell junction assembly
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016032 P viral process
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0036498 P IRE1-mediated unfolded protein response
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
FPKM:3.28 TPM:1.46
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