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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3421 A_BomaMSG_c13656_g1_i1
546bp
probable_protein_phosphatase_2C_T23F11.1_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0030517 P negative regulation of axon extension
GO:0031625 F ubiquitin protein ligase binding
GO:0043169 F cation binding
GO:0046872 F metal ion binding
GO:0048786 C presynaptic active zone
GO:0051965 P positive regulation of synapse assembly
FPKM:1.70 TPM:0.76
3422 A_BomaMSG_c13658_g1_i1
275bp
nucleolar_MIF4G_domain-containing_protein_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0022008 P neurogenesis
GO:0042274 P ribosomal small subunit biogenesis
FPKM:3.21 TPM:1.44
3423 A_BomaMSG_c1365_g1_i1
223bp
FPKM:4.48 TPM:2.00
3424 A_BomaMSG_c13661_g1_i1
238bp
FPKM:5.27 TPM:2.35
3425 A_BomaMSG_c13662_g1_i1
242bp
FPKM:0.00 TPM:0.00
3426 A_BomaMSG_c13662_g1_i2
432bp
FPKM:4.06 TPM:1.81
3427 A_BomaMSG_c13663_g1_i1
304bp
zinc_finger_protein_431-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.61 TPM:1.17
3428 A_BomaMSG_c13663_g1_i2
240bp
zinc_finger_protein_431-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
3429 A_BomaMSG_c13664_g1_i1
512bp
C-1-tetrahydrofolate_synthase,_cytoplasmic_isoform_X2_[Bombyx_mori]
GO:0000105 P histidine biosynthetic process
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004329 F formate-tetrahydrofolate ligase activity
GO:0004477 F methenyltetrahydrofolate cyclohydrolase activity
GO:0004488 F methylenetetrahydrofolate dehydrogenase (NADP+) activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006164 P purine nucleotide biosynthetic process
GO:0006730 P one-carbon metabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0009396 P folic acid-containing compound biosynthetic process
GO:0016491 F oxidoreductase activity
GO:0016787 F hydrolase activity
GO:0016874 F ligase activity
GO:0035999 P tetrahydrofolate interconversion
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.86 TPM:0.83
3430 A_BomaMSG_c13664_g2_i1
650bp
C-1-tetrahydrofolate_synthase,_cytoplasmic_isoform_X2_[Bombyx_mori]
GO:0000105 P histidine biosynthetic process
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004329 F formate-tetrahydrofolate ligase activity
GO:0004477 F methenyltetrahydrofolate cyclohydrolase activity
GO:0004488 F methylenetetrahydrofolate dehydrogenase (NADP+) activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006164 P purine nucleotide biosynthetic process
GO:0006730 P one-carbon metabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0009396 P folic acid-containing compound biosynthetic process
GO:0016491 F oxidoreductase activity
GO:0016787 F hydrolase activity
GO:0016874 F ligase activity
GO:0035999 P tetrahydrofolate interconversion
GO:0055114 P obsolete oxidation-reduction process
FPKM:4.71 TPM:2.11
3431 A_BomaMSG_c13665_g1_i1
351bp
MMS19_nucleotide_excision_repair_protein_homolog_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016226 P iron-sulfur cluster assembly
GO:0097361 C CIA complex
FPKM:3.34 TPM:1.49
3432 A_BomaMSG_c13666_g1_i1
303bp
Predicted_protein_[Planktothrix_serta_PCC_8927]
FPKM:6.58 TPM:2.94
3433 A_BomaMSG_c13667_g1_i1
224bp
FPKM:4.43 TPM:1.98
3434 A_BomaMSG_c13668_g1_i1
454bp
zinc_finger_CCCH_domain-containing_protein_18_isoform_X2_[Bombyx_mori]
FPKM:4.20 TPM:1.88
3435 A_BomaMSG_c13669_g1_i1
372bp
protein_Dok-7_[Bombyx_mori]
FPKM:4.24 TPM:1.89
3436 A_BomaMSG_c13671_g1_i1
464bp
arginine/serine-rich_coiled-coil_protein_2_isoform_X2_[Bombyx_mori]
FPKM:3.13 TPM:1.40
3437 A_BomaMSG_c13671_g1_i2
260bp
U1_small_nuclear_ribonucleoprotein_70_kDa_isoform_X4_[Bombyx_mori]
FPKM:3.27 TPM:1.46
3438 A_BomaMSG_c13672_g1_i1
849bp
FPKM:3.18 TPM:1.42
3439 A_BomaMSG_c13673_g1_i1
755bp
uncharacterized_protein_LOC101741655_isoform_X2_[Bombyx_mori]
FPKM:2.00 TPM:0.90
3440 A_BomaMSG_c13674_g1_i1
233bp
FPKM:5.56 TPM:2.49
3441 A_BomaMSG_c13675_g1_i1
256bp
enoyl-CoA_delta_isomerase_1,_mitochondrial_[Bombyx_mori]
FPKM:7.55 TPM:3.37
3442 A_BomaMSG_c13679_g1_i1
248bp
FPKM:8.15 TPM:3.64
3443 A_BomaMSG_c1367_g1_i1
311bp
FPKM:3.75 TPM:1.68
3444 A_BomaMSG_c13680_g1_i1
279bp
FPKM:14.02 TPM:6.27
3445 A_BomaMSG_c13681_g1_i1
388bp
retinol_dehydrogenase_13_[Bombyx_mori]
GO:0001523 P retinoid metabolic process
GO:0004745 F NAD-retinol dehydrogenase activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0007601 P visual perception
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0042572 P retinol metabolic process
GO:0045494 P photoreceptor cell maintenance
GO:0050896 P response to stimulus
GO:0052650 F NADP-retinol dehydrogenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0060342 C photoreceptor inner segment membrane
FPKM:3.11 TPM:1.39
3446 A_BomaMSG_c13681_g2_i1
634bp
retinol_dehydrogenase_13_[Bombyx_mori]
GO:0001917 C photoreceptor inner segment
GO:0004745 F NAD-retinol dehydrogenase activity
GO:0005622 C intracellular anatomical structure
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016062 P adaptation of rhodopsin mediated signaling
GO:0016491 F oxidoreductase activity
GO:0042572 P retinol metabolic process
GO:0042574 P retinal metabolic process
GO:0042622 C photoreceptor outer segment membrane
GO:0052650 F NADP-retinol dehydrogenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.50 TPM:1.12
3447 A_BomaMSG_c13682_g1_i1
308bp
FPKM:5.95 TPM:2.66
3448 A_BomaMSG_c13683_g1_i1
366bp
FPKM:2.18 TPM:0.97
3449 A_BomaMSG_c13684_g1_i1
218bp
FPKM:2.87 TPM:1.28
3450 A_BomaMSG_c13685_g1_i1
431bp
BAH_and_coiled-coil_domain-containing_protein_1_isoform_X1_[Bombyx_mori]
FPKM:4.07 TPM:1.82
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