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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3481 A_BomaMSG_c13718_g1_i1
534bp
uncharacterized_protein_LOC101741222_isoform_X4_[Bombyx_mori]
FPKM:2.45 TPM:1.10
3482 A_BomaMSG_c13719_g1_i1
324bp
FPKM:2.70 TPM:1.21
3483 A_BomaMSG_c13719_g2_i1
239bp
FPKM:1.49 TPM:0.67
3484 A_BomaMSG_c1371_g1_i1
566bp
LOW_QUALITY_PROTEIN:_nucleoprotein_TPR_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0003677 F DNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005652 C nuclear lamina
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005719 C euchromatin
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006325 P chromatin organization
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007346 P regulation of mitotic cell cycle
GO:0009408 P response to heat
GO:0010965 P regulation of mitotic sister chromatid separation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0030496 C midbody
GO:0031490 F chromatin DNA binding
GO:0031965 C nuclear membrane
GO:0032888 P regulation of mitotic spindle elongation
GO:0034399 C nuclear periphery
GO:0034401 P obsolete chromatin organization involved in regulation of transcription
GO:0034976 P response to endoplasmic reticulum stress
GO:0042405 C nuclear inclusion body
GO:0043021 F ribonucleoprotein complex binding
GO:0045840 P positive regulation of mitotic nuclear division
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051028 P mRNA transport
GO:0051225 P spindle assembly
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0051781 P positive regulation of cell division
GO:0051983 P regulation of chromosome segregation
GO:0060236 P regulation of mitotic spindle organization
GO:0070090 C metaphase plate
GO:0072686 C mitotic spindle
GO:0090235 P regulation of metaphase plate congression
GO:0090267 P positive regulation of mitotic cell cycle spindle assembly checkpoint
GO:0090316 P positive regulation of intracellular protein transport
GO:1901673 P regulation of mitotic spindle assembly
GO:1990047 C spindle matrix
FPKM:3.56 TPM:1.59
3485 A_BomaMSG_c13720_g1_i1
390bp
LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007165 P signal transduction
GO:0010976 P positive regulation of neuron projection development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0046982 F protein heterodimerization activity
GO:0048593 P camera-type eye morphogenesis
GO:0097264 P self proteolysis
FPKM:2.52 TPM:1.13
3486 A_BomaMSG_c13721_g1_i1
202bp
pro-epidermal_growth_factor_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000139 C Golgi membrane
GO:0003015 P heart process
GO:0005154 F epidermal growth factor receptor binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007399 P nervous system development
GO:0007421 P stomatogastric nervous system development
GO:0007422 P peripheral nervous system development
GO:0007424 P open tracheal system development
GO:0007432 P salivary gland boundary specification
GO:0007438 P oenocyte development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008284 P positive regulation of cell population proliferation
GO:0008317 F gurken receptor binding
GO:0008355 P olfactory learning
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016330 P second mitotic wave involved in compound eye morphogenesis
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0035225 P determination of genital disc primordium
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0043066 P negative regulation of apoptotic process
GO:0045470 P R8 cell-mediated photoreceptor organization
GO:0045742 P positive regulation of epidermal growth factor receptor signaling pathway
GO:0046673 P negative regulation of compound eye retinal cell programmed cell death
GO:0046845 P branched duct epithelial cell fate determination, open tracheal system
GO:0048149 P behavioral response to ethanol
GO:0048865 P stem cell fate commitment
GO:0050769 P positive regulation of neurogenesis
GO:0061331 P epithelial cell proliferation involved in Malpighian tubule morphogenesis
FPKM:1.42 TPM:0.63
3487 A_BomaMSG_c13721_g1_i2
932bp
pro-epidermal_growth_factor_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000139 C Golgi membrane
GO:0003015 P heart process
GO:0005154 F epidermal growth factor receptor binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007399 P nervous system development
GO:0007421 P stomatogastric nervous system development
GO:0007422 P peripheral nervous system development
GO:0007424 P open tracheal system development
GO:0007432 P salivary gland boundary specification
GO:0007438 P oenocyte development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008284 P positive regulation of cell population proliferation
GO:0008317 F gurken receptor binding
GO:0008355 P olfactory learning
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016330 P second mitotic wave involved in compound eye morphogenesis
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0035225 P determination of genital disc primordium
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0043066 P negative regulation of apoptotic process
GO:0045470 P R8 cell-mediated photoreceptor organization
GO:0045742 P positive regulation of epidermal growth factor receptor signaling pathway
GO:0046673 P negative regulation of compound eye retinal cell programmed cell death
GO:0046845 P branched duct epithelial cell fate determination, open tracheal system
GO:0048149 P behavioral response to ethanol
GO:0048865 P stem cell fate commitment
GO:0050769 P positive regulation of neurogenesis
GO:0061331 P epithelial cell proliferation involved in Malpighian tubule morphogenesis
FPKM:3.77 TPM:1.69
3488 A_BomaMSG_c13722_g1_i1
808bp
pre-mRNA-splicing_factor_SYF1_[Bombyx_mori]
GO:0000349 P generation of catalytic spliceosome for first transesterification step
GO:0000974 C Prp19 complex
GO:0001824 P blastocyst development
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0021987 P cerebral cortex development
GO:0071010 C prespliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
FPKM:3.38 TPM:1.51
3489 A_BomaMSG_c13723_g1_i1
241bp
FPKM:2.92 TPM:1.30
3490 A_BomaMSG_c13724_g1_i1
297bp
FPKM:2.28 TPM:1.02
3491 A_BomaMSG_c13725_g1_i1
271bp
FPKM:1.66 TPM:0.74
3492 A_BomaMSG_c13726_g1_i1
396bp
FPKM:3.28 TPM:1.47
3493 A_BomaMSG_c13730_g1_i1
227bp
FPKM:3.41 TPM:1.53
3494 A_BomaMSG_c13730_g2_i1
344bp
FPKM:1.73 TPM:0.77
3495 A_BomaMSG_c13731_g1_i1
221bp
FPKM:11.04 TPM:4.93
3496 A_BomaMSG_c13733_g1_i1
401bp
protein_penguin_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005575 C cellular_component
GO:0005730 C nucleolus
GO:0006417 P regulation of translation
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
FPKM:2.95 TPM:1.32
3497 A_BomaMSG_c13734_g1_i1
226bp
FPKM:6.05 TPM:2.70
3498 A_BomaMSG_c13735_g1_i1
657bp
UPF0518_protein_GF15501_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.94 TPM:1.31
3499 A_BomaMSG_c13735_g1_i2
567bp
UPF0518_protein_GF15501_[Helicoverpa_armigera]
FPKM:0.62 TPM:0.28
3500 A_BomaMSG_c13736_g1_i1
278bp
FPKM:1.57 TPM:0.70
3501 A_BomaMSG_c13737_g1_i1
233bp
CD2-associated_protein_isoform_X1_[Bombyx_mori]
FPKM:7.96 TPM:3.56
3502 A_BomaMSG_c13739_g1_i1
661bp
FPKM:2.77 TPM:1.24
3503 A_BomaMSG_c1373_g1_i1
320bp
FPKM:3.16 TPM:1.41
3504 A_BomaMSG_c13740_g1_i1
209bp
FPKM:2.17 TPM:0.97
3505 A_BomaMSG_c13741_g1_i1
374bp
FPKM:2.10 TPM:0.94
3506 A_BomaMSG_c13742_g1_i1
271bp
carbonyl_reductase_[NADPH]_1_[Bombyx_mori]
GO:0004090 F carbonyl reductase (NADPH) activity
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0017144 P xenobiotic metabolic process
GO:0042373 P vitamin K metabolic process
GO:0047021 F 15-hydroxyprostaglandin dehydrogenase (NADP+) activity
GO:0050221 F prostaglandin-E2 9-reductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:8.30 TPM:3.71
3507 A_BomaMSG_c13743_g1_i1
308bp
actin_cytoskeleton-regulatory_complex_protein_pan-1-like_[Bombyx_mori]
FPKM:1.27 TPM:0.57
3508 A_BomaMSG_c13744_g1_i1
503bp
uncharacterized_protein_LOC110385496_isoform_X1_[Bombyx_mori]
FPKM:2.10 TPM:0.94
3509 A_BomaMSG_c13745_g1_i1
787bp
RING_finger_and_transmembrane_domain-containing_protein_2_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0046872 F metal ion binding
FPKM:3.80 TPM:1.70
3510 A_BomaMSG_c13746_g1_i1
844bp
SET_and_MYND_domain-containing_protein_4_[Bombyx_mori]
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
FPKM:2.43 TPM:1.08
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