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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3271 A_BomaMSG_c13520_g1_i1
246bp
uncharacterized_protein_LOC101744721_isoform_X1_[Bombyx_mori]
FPKM:3.46 TPM:1.55
3272 A_BomaMSG_c13521_g1_i1
456bp
gastrula_zinc_finger_protein_XlCGF17.1-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:6.60 TPM:2.95
3273 A_BomaMSG_c13522_g1_i1
797bp
plexin-B_[Bombyx_mori]
GO:0002116 C semaphorin receptor complex
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017154 F semaphorin receptor activity
GO:0030154 P cell differentiation
GO:0030334 P regulation of cell migration
GO:0035021 P negative regulation of Rac protein signal transduction
GO:0035025 P positive regulation of Rho protein signal transduction
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0071526 P semaphorin-plexin signaling pathway
GO:0071678 P olfactory bulb axon guidance
GO:0097374 P sensory neuron axon guidance
GO:1902287 P semaphorin-plexin signaling pathway involved in axon guidance
FPKM:2.40 TPM:1.07
3274 A_BomaMSG_c13524_g1_i1
222bp
Connector_enhancer_of_kinase_suppressor_of_ras_2_[Operophtera_brumata]
FPKM:9.08 TPM:4.06
3275 A_BomaMSG_c13525_g1_i1
1022bp
UDP-sugar_transporter_UST74c_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0001745 P compound eye morphogenesis
GO:0005457 F GDP-fucose transmembrane transporter activity
GO:0005458 F GDP-mannose transmembrane transporter activity
GO:0005459 F UDP-galactose transmembrane transporter activity
GO:0005460 F UDP-glucose transmembrane transporter activity
GO:0005461 F UDP-glucuronic acid transmembrane transporter activity
GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity
GO:0005464 F UDP-xylose transmembrane transporter activity
GO:0005794 C Golgi apparatus
GO:0005797 C Golgi medial cisterna
GO:0006810 P transport
GO:0007220 P Notch receptor processing
GO:0007367 P segment polarity determination
GO:0007423 P sensory organ development
GO:0007447 P imaginal disc pattern formation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008643 P carbohydrate transport
GO:0009880 P embryonic pattern specification
GO:0015165 F pyrimidine nucleotide-sugar transmembrane transporter activity
GO:0015297 F antiporter activity
GO:0015781 P pyrimidine nucleotide-sugar transmembrane transport
GO:0015785 P UDP-galactose transmembrane transport
GO:0015786 P UDP-glucose transmembrane transport
GO:0015787 P UDP-glucuronic acid transmembrane transport
GO:0015788 P UDP-N-acetylglucosamine transmembrane transport
GO:0015790 P UDP-xylose transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
GO:0072334 P UDP-galactose transmembrane transport
GO:0090481 P pyrimidine nucleotide-sugar transmembrane transport
GO:1990569 P UDP-N-acetylglucosamine transmembrane transport
FPKM:5.10 TPM:2.28
3276 A_BomaMSG_c13526_g1_i1
447bp
FPKM:3.17 TPM:1.42
3277 A_BomaMSG_c13527_g1_i1
448bp
gamma-1-syntrophin_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0030165 F PDZ domain binding
GO:0042383 C sarcolemma
GO:0097109 F neuroligin family protein binding
FPKM:3.39 TPM:1.51
3278 A_BomaMSG_c13528_g1_i1
417bp
FPKM:2.27 TPM:1.01
3279 A_BomaMSG_c13529_g1_i1
536bp
alanine--tRNA_ligase,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004813 F alanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006400 P tRNA modification
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0016597 F amino acid binding
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0019233 P sensory perception of pain
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
FPKM:1.92 TPM:0.86
3280 A_BomaMSG_c13529_g2_i1
1211bp
alanine--tRNA_ligase,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004813 F alanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006400 P tRNA modification
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0016597 F amino acid binding
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0019233 P sensory perception of pain
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
FPKM:2.67 TPM:1.19
3281 A_BomaMSG_c1352_g1_i1
242bp
trafficking_protein_particle_complex_subunit_11_[Bombyx_mori]
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016192 P vesicle-mediated transport
FPKM:10.10 TPM:4.51
3282 A_BomaMSG_c13530_g1_i1
215bp
fatty_acid_synthase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004312 F fatty acid synthase activity
GO:0004313 F [acyl-carrier-protein] S-acetyltransferase activity
GO:0004314 F [acyl-carrier-protein] S-malonyltransferase activity
GO:0004315 F 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0004316 F 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0004317 F 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity
GO:0004319 F enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity
GO:0004320 F oleoyl-[acyl-carrier-protein] hydrolase activity
GO:0005623 C obsolete cell
GO:0006089 P lactate metabolic process
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0016295 F myristoyl-[acyl-carrier-protein] hydrolase activity
GO:0016296 F palmitoyl-[acyl-carrier-protein] hydrolase activity
GO:0016297 F acyl-[acyl-carrier-protein] hydrolase activity
GO:0016491 F oxidoreductase activity
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0016829 F lyase activity
GO:0019171 F 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
GO:0031177 F phosphopantetheine binding
GO:0032100 P positive regulation of appetite
GO:0047117 F enoyl-[acyl-carrier-protein] reductase (NADPH, A-specific) activity
GO:0047451 F 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:10.97 TPM:4.90
3283 A_BomaMSG_c13531_g1_i1
342bp
FPKM:1.40 TPM:0.63
3284 A_BomaMSG_c13532_g1_i1
240bp
myotubularin-related_protein_3_[Bombyx_mori]
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006470 P protein dephosphorylation
GO:0006629 P lipid metabolic process
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0016020 C membrane
GO:0016236 P macroautophagy
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0019898 C extrinsic component of membrane
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0042149 P cellular response to glucose starvation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0046872 F metal ion binding
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
GO:1904562 P phosphatidylinositol 5-phosphate metabolic process
GO:2000785 P regulation of autophagosome assembly
FPKM:2.97 TPM:1.33
3285 A_BomaMSG_c13532_g1_i2
365bp
myotubularin-related_protein_3_[Bombyx_mori]
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006470 P protein dephosphorylation
GO:0006629 P lipid metabolic process
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0016020 C membrane
GO:0016236 P macroautophagy
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0019898 C extrinsic component of membrane
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0042149 P cellular response to glucose starvation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0046872 F metal ion binding
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
GO:1904562 P phosphatidylinositol 5-phosphate metabolic process
GO:2000785 P regulation of autophagosome assembly
FPKM:7.18 TPM:3.21
3286 A_BomaMSG_c13534_g1_i1
393bp
FPKM:20.75 TPM:9.27
3287 A_BomaMSG_c13535_g1_i1
233bp
FPKM:3.98 TPM:1.78
3288 A_BomaMSG_c13536_g1_i1
725bp
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:1.64 TPM:0.73
3289 A_BomaMSG_c13537_g1_i1
570bp
general_transcription_factor_IIH_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
FPKM:1.92 TPM:0.86
3290 A_BomaMSG_c13538_g1_i1
1163bp
eukaryotic_translation_initiation_factor_2_alpha_subunit_isoform_X1_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000049 F tRNA binding
GO:0001677 P formation of translation initiation ternary complex
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0005840 C ribosome
GO:0005850 C eukaryotic translation initiation factor 2 complex
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0005875 C microtubule associated complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0007052 P mitotic spindle organization
GO:0033290 C eukaryotic 48S preinitiation complex
GO:0043022 F ribosome binding
GO:0043614 C multi-eIF complex
FPKM:31.17 TPM:13.93
3291 A_BomaMSG_c13539_g1_i1
467bp
small_subunit_processome_component_20_homolog_[Bombyx_mori]
FPKM:3.61 TPM:1.61
3292 A_BomaMSG_c1353_g1_i1
292bp
nesprin-1_isoform_X2_[Bombyx_mori]
FPKM:2.36 TPM:1.06
3293 A_BomaMSG_c13540_g1_i1
375bp
FPKM:3.59 TPM:1.60
3294 A_BomaMSG_c13541_g1_i1
1555bp
eukaryotic_initiation_factor_5C_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007616 P long-term memory
GO:0016199 P axon midline choice point recognition
GO:0017148 P negative regulation of translation
GO:0030175 C filopodium
GO:0030424 C axon
GO:0030707 P ovarian follicle cell development
GO:0031369 F translation initiation factor binding
GO:0043022 F ribosome binding
GO:0043025 C neuronal cell body
GO:0044295 C axonal growth cone
GO:0048149 P behavioral response to ethanol
GO:0048477 P oogenesis
GO:0048663 P neuron fate commitment
GO:0051491 P positive regulation of filopodium assembly
FPKM:85.49 TPM:38.20
3295 A_BomaMSG_c13542_g1_i1
955bp
26S_proteasome_non-ATPase_regulatory_subunit_8_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0005838 C proteasome regulatory particle
GO:0006508 P proteolysis
GO:0008541 C proteasome regulatory particle, lid subcomplex
GO:0022624 C proteasome accessory complex
GO:0031647 P regulation of protein stability
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043248 P proteasome assembly
GO:0070062 C extracellular exosome
GO:1903955 P positive regulation of protein targeting to mitochondrion
FPKM:42.15 TPM:18.84
3296 A_BomaMSG_c13543_g1_i1
559bp
FPKM:2.30 TPM:1.03
3297 A_BomaMSG_c13544_g1_i1
331bp
FPKM:4.82 TPM:2.16
3298 A_BomaMSG_c13545_g1_i1
606bp
protein_phosphatase_PP2A_55_kDa_regulatory_subunit_isoform_X3_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0000278 P mitotic cell cycle
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005875 C microtubule associated complex
GO:0006470 P protein dephosphorylation
GO:0007091 P metaphase/anaphase transition of mitotic cell cycle
GO:0007099 P centriole replication
GO:0007406 P negative regulation of neuroblast proliferation
GO:0007423 P sensory organ development
GO:0007447 P imaginal disc pattern formation
GO:0008601 F protein phosphatase regulator activity
GO:0016055 P Wnt signaling pathway
GO:0030071 P regulation of mitotic metaphase/anaphase transition
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0045201 P maintenance of neuroblast polarity
GO:0050821 P protein stabilization
GO:0051297 P centrosome cycle
FPKM:3.84 TPM:1.72
3299 A_BomaMSG_c13546_g1_i1
456bp
FPKM:2.86 TPM:1.28
3300 A_BomaMSG_c13547_g1_i1
672bp
transcription_initiation_factor_TFIID_subunit_3_[Bombyx_mori]
FPKM:5.16 TPM:2.31
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