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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3181 A_BomaMSG_c13438_g1_i1
280bp
FPKM:1.55 TPM:0.69
3182 A_BomaMSG_c13438_g2_i1
768bp
FPKM:1.74 TPM:0.78
3183 A_BomaMSG_c13440_g1_i1
320bp
xanthine_dehydrogenase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004854 F xanthine dehydrogenase activity
GO:0004855 F xanthine oxidase activity
GO:0005506 F iron ion binding
GO:0005777 C peroxisome
GO:0009055 F electron transfer activity
GO:0009115 P xanthine catabolic process
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0043546 F molybdopterin cofactor binding
GO:0046872 F metal ion binding
GO:0050660 F flavin adenine dinucleotide binding
GO:0051536 F iron-sulfur cluster binding
GO:0051537 F 2 iron, 2 sulfur cluster binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.77 TPM:1.24
3184 A_BomaMSG_c13441_g1_i1
366bp
cell_division_cycle_2_[Bombyx_mori]
FPKM:3.11 TPM:1.39
3185 A_BomaMSG_c13442_g1_i1
414bp
ATP-dependent_DNA_helicase_PIF1_[Bombyx_mori]
GO:0000002 P mitochondrial genome maintenance
GO:0000166 F nucleotide binding
GO:0000723 P telomere maintenance
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0010521 F telomerase inhibitor activity
GO:0016787 F hydrolase activity
GO:0032211 P negative regulation of telomere maintenance via telomerase
GO:0032508 P DNA duplex unwinding
GO:0043141 F 5'-3' DNA helicase activity
GO:0044806 P G-quadruplex DNA unwinding
GO:0051974 P negative regulation of telomerase activity
FPKM:3.31 TPM:1.48
3186 A_BomaMSG_c13443_g1_i1
829bp
sarcolemmal_membrane-associated_protein_isoform_X1_[Bombyx_mori]
FPKM:2.38 TPM:1.06
3187 A_BomaMSG_c13443_g1_i2
616bp
sarcolemmal_membrane-associated_protein_isoform_X1_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3188 A_BomaMSG_c13444_g1_i1
490bp
FPKM:2.37 TPM:1.06
3189 A_BomaMSG_c13445_g1_i1
496bp
ATP-dependent_(S)-NAD(P)H-hydrate_dehydratase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0008152 P metabolic process
GO:0016829 F lyase activity
GO:0047453 F ATP-dependent NAD(P)H-hydrate dehydratase activity
GO:0052855 F ADP-dependent NAD(P)H-hydrate dehydratase activity
FPKM:4.47 TPM:2.00
3190 A_BomaMSG_c13446_g1_i1
403bp
MAP7_domain-containing_protein_1_[Bombyx_mori]
FPKM:7.97 TPM:3.56
3191 A_BomaMSG_c13447_g1_i1
833bp
X-ray_repair_cross-complementing_protein_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000723 P telomere maintenance
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0042162 F telomeric DNA binding
GO:0043564 C Ku70:Ku80 complex
FPKM:3.65 TPM:1.63
3192 A_BomaMSG_c13448_g1_i1
220bp
zinc_finger_protein_432_[Bombyx_mori]
FPKM:1.86 TPM:0.83
3193 A_BomaMSG_c13449_g1_i1
411bp
FPKM:4.64 TPM:2.07
3194 A_BomaMSG_c13450_g1_i1
289bp
FPKM:4.82 TPM:2.16
3195 A_BomaMSG_c13451_g1_i1
534bp
WD_repeat-containing_protein_75_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
FPKM:2.80 TPM:1.25
3196 A_BomaMSG_c13452_g1_i1
643bp
putative_transferase_CAF17_homolog,_mitochondrial_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006783 P heme biosynthetic process
GO:0016226 P iron-sulfur cluster assembly
GO:0016740 F transferase activity
FPKM:2.88 TPM:1.28
3197 A_BomaMSG_c13452_g1_i2
551bp
putative_transferase_CAF17_homolog,_mitochondrial_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006783 P heme biosynthetic process
GO:0016226 P iron-sulfur cluster assembly
GO:0016740 F transferase activity
FPKM:1.84 TPM:0.82
3198 A_BomaMSG_c13453_g1_i1
796bp
cytochrome_c_oxidase_assembly_protein_COX15_homolog_isoform_X2_[Bombyx_mori]
FPKM:1.56 TPM:0.70
3199 A_BomaMSG_c13453_g1_i2
655bp
cytochrome_c_oxidase_assembly_protein_COX15_homolog_isoform_X2_[Bombyx_mori]
GO:0004129 F cytochrome-c oxidase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006784 P heme A biosynthetic process
GO:0008535 P respiratory chain complex IV assembly
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0016653 F oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor
GO:0031966 C mitochondrial membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070069 C cytochrome complex
GO:1902600 P proton transmembrane transport
FPKM:1.86 TPM:0.83
3200 A_BomaMSG_c13455_g1_i1
245bp
PREDICTED:_uncharacterized_protein_LOC106138993_[Amyelois_transitella]
FPKM:4.90 TPM:2.19
3201 A_BomaMSG_c13456_g1_i1
441bp
Uncharacterized_protein_OBRU01_24464_[Operophtera_brumata]
FPKM:2.77 TPM:1.24
3202 A_BomaMSG_c13457_g1_i1
563bp
LOW_QUALITY_PROTEIN:_supporter_of_activation_of_yellow_protein_[Bombyx_mori]
FPKM:5.70 TPM:2.55
3203 A_BomaMSG_c13458_g1_i1
374bp
FPKM:4.20 TPM:1.88
3204 A_BomaMSG_c13459_g1_i1
555bp
probable_NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_12_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008137 F NADH dehydrogenase (ubiquinone) activity
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
FPKM:37.56 TPM:16.78
3205 A_BomaMSG_c1345_g1_i1
218bp
hypothetical_protein_[uncultured_bacterium]
FPKM:2.87 TPM:1.28
3206 A_BomaMSG_c13460_g1_i1
423bp
alanine--glyoxylate_aminotransferase_2,_mitochondrial_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0002161 F aminoacyl-tRNA editing activity
GO:0002196 F Ser-tRNA(Ala) hydrolase activity
GO:0003676 F nucleic acid binding
GO:0004813 F alanine-tRNA ligase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0006450 P regulation of translational fidelity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
FPKM:0.55 TPM:0.24
3207 A_BomaMSG_c13460_g1_i2
522bp
alanine--glyoxylate_aminotransferase_2,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004813 F alanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
FPKM:1.95 TPM:0.87
3208 A_BomaMSG_c13461_g1_i1
235bp
chromatin-remodeling_complex_ATPase_chain_Iswi_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000790 C chromatin
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005700 C polytene chromosome
GO:0006325 P chromatin organization
GO:0006333 P chromatin assembly or disassembly
GO:0006334 P nucleosome assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007517 P muscle organ development
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008134 F transcription factor binding
GO:0008623 C CHRAC
GO:0016568 P chromatin organization
GO:0016584 P nucleosome positioning
GO:0016589 C NURF complex
GO:0016590 C ACF complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0019233 P sensory perception of pain
GO:0031010 C ISWI-type complex
GO:0031213 C RSF complex
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035060 C brahma complex
GO:0035063 P nuclear speck organization
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0042752 P regulation of circadian rhythm
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0070615 F ATP-dependent chromatin remodeler activity
FPKM:3.78 TPM:1.69
3209 A_BomaMSG_c13461_g1_i2
650bp
chromatin-remodeling_complex_ATPase_chain_Iswi_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000790 C chromatin
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005700 C polytene chromosome
GO:0006325 P chromatin organization
GO:0006333 P chromatin assembly or disassembly
GO:0006334 P nucleosome assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007517 P muscle organ development
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008134 F transcription factor binding
GO:0008623 C CHRAC
GO:0016568 P chromatin organization
GO:0016584 P nucleosome positioning
GO:0016589 C NURF complex
GO:0016590 C ACF complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0019233 P sensory perception of pain
GO:0031010 C ISWI-type complex
GO:0031213 C RSF complex
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035060 C brahma complex
GO:0035063 P nuclear speck organization
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0042752 P regulation of circadian rhythm
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0070615 F ATP-dependent chromatin remodeler activity
FPKM:4.06 TPM:1.81
3210 A_BomaMSG_c13463_g1_i1
789bp
RNA-binding_protein_Nova-2_isoform_X7_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0021510 P spinal cord development
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0050684 P regulation of mRNA processing
GO:0051252 P regulation of RNA metabolic process
FPKM:1.87 TPM:0.84
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