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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3211 A_BomaMSG_c13463_g1_i2
416bp
FPKM:2.08 TPM:0.93
3212 A_BomaMSG_c13464_g1_i1
272bp
mediator_of_RNA_polymerase_II_transcription_subunit_16_[Bombyx_mori]
FPKM:2.19 TPM:0.98
3213 A_BomaMSG_c13465_g1_i1
558bp
FPKM:5.44 TPM:2.43
3214 A_BomaMSG_c13466_g1_i1
859bp
FPKM:3.61 TPM:1.61
3215 A_BomaMSG_c13467_g1_i1
250bp
transportin-3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0008139 F nuclear localization sequence binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031965 C nuclear membrane
GO:0035048 P obsolete splicing factor protein import into nucleus
GO:0042802 F identical protein binding
GO:0043231 C intracellular membrane-bounded organelle
FPKM:9.32 TPM:4.17
3216 A_BomaMSG_c13468_g1_i1
271bp
FPKM:2.77 TPM:1.24
3217 A_BomaMSG_c13469_g1_i1
588bp
FPKM:3.84 TPM:1.72
3218 A_BomaMSG_c13470_g1_i1
230bp
FPKM:4.94 TPM:2.21
3219 A_BomaMSG_c13471_g1_i1
486bp
PREDICTED:_LOW_QUALITY_PROTEIN:_endoribonuclease_Dcr-1_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003727 F single-stranded RNA binding
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0004530 F deoxyribonuclease I activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006309 P apoptotic DNA fragmentation
GO:0006396 P RNA processing
GO:0007279 P pole cell formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007367 P segment polarity determination
GO:0016246 P RNA interference
GO:0016442 C RISC complex
GO:0016443 F bidentate ribonuclease III activity
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0030422 P production of siRNA involved in RNA interference
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0033227 P dsRNA transport
GO:0035087 P siRNA loading onto RISC involved in RNA interference
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042078 P germ-line stem cell division
GO:0042594 P response to starvation
GO:0045448 P mitotic cell cycle, embryonic
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0070883 F pre-miRNA binding
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:3.00 TPM:1.34
3220 A_BomaMSG_c13473_g1_i1
254bp
FPKM:8.33 TPM:3.72
3221 A_BomaMSG_c13474_g1_i1
642bp
FPKM:6.29 TPM:2.81
3222 A_BomaMSG_c13475_g1_i1
299bp
FPKM:14.86 TPM:6.64
3223 A_BomaMSG_c13477_g1_i1
382bp
FPKM:1.74 TPM:0.78
3224 A_BomaMSG_c13478_g1_i1
1051bp
ubiquitin_conjugating_enzyme_E2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006301 P postreplication repair
GO:0006979 P response to oxidative stress
GO:0007409 P axonogenesis
GO:0007412 P axon target recognition
GO:0007625 P grooming behavior
GO:0007629 P flight behavior
GO:0007630 P jump response
GO:0008594 P photoreceptor cell morphogenesis
GO:0010942 P positive regulation of cell death
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0035370 C UBC13-UEV1A complex
GO:0045977 P positive regulation of mitotic cell cycle, embryonic
GO:0046330 P positive regulation of JNK cascade
GO:0048471 C perinuclear region of cytoplasm
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0060074 P synapse maturation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0072347 P response to anesthetic
GO:1902916 P positive regulation of protein polyubiquitination
FPKM:24.65 TPM:11.02
3225 A_BomaMSG_c1347_g1_i1
237bp
FPKM:0.76 TPM:0.34
3226 A_BomaMSG_c13480_g1_i1
1354bp
uncharacterized_protein_LOC101739844_isoform_X1_[Bombyx_mori]
FPKM:43.68 TPM:19.52
3227 A_BomaMSG_c13481_g1_i1
362bp
FPKM:0.63 TPM:0.28
3228 A_BomaMSG_c13482_g1_i1
798bp
inositol_polyphosphate_5-phosphatase_K_isoform_X2_[Bombyx_mori]
FPKM:3.95 TPM:1.76
3229 A_BomaMSG_c13482_g2_i1
560bp
inositol_polyphosphate_5-phosphatase_K_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0001726 C ruffle
GO:0004439 F phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0004445 F inositol-polyphosphate 5-phosphatase activity
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0006629 P lipid metabolic process
GO:0010976 P positive regulation of neuron projection development
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0032580 C Golgi cisterna membrane
GO:0042995 C cell projection
GO:0046488 P phosphatidylinositol metabolic process
GO:0046855 P inositol phosphate dephosphorylation
GO:0046856 P phosphatidylinositol dephosphorylation
FPKM:3.45 TPM:1.54
3230 A_BomaMSG_c13483_g1_i1
266bp
protein_enabled_homolog_[Bombyx_mori]
FPKM:4.61 TPM:2.06
3231 A_BomaMSG_c13484_g1_i1
578bp
uncharacterized_protein_LOC105842907_[Bombyx_mori]
FPKM:2.99 TPM:1.34
3232 A_BomaMSG_c13484_g2_i1
460bp
uncharacterized_protein_LOC105842907_[Bombyx_mori]
FPKM:2.39 TPM:1.07
3233 A_BomaMSG_c13485_g1_i1
590bp
epidermal_growth_factor_receptor_substrate_15-like_1_[Bombyx_mori]
FPKM:5.51 TPM:2.46
3234 A_BomaMSG_c13486_g1_i1
343bp
FPKM:1.39 TPM:0.62
3235 A_BomaMSG_c13487_g1_i1
365bp
survivin-1_[Bombyx_mori]
FPKM:2.81 TPM:1.26
3236 A_BomaMSG_c13488_g1_i1
239bp
acetylcholinesterase_2,_partial_[Bombyx_mori]
GO:0001507 P acetylcholine catabolic process in synaptic cleft
GO:0003990 F acetylcholinesterase activity
GO:0004104 F cholinesterase activity
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030054 C cell junction
GO:0031225 C anchored component of membrane
GO:0042135 P neurotransmitter catabolic process
GO:0043083 C synaptic cleft
GO:0045202 C synapse
GO:0052689 F carboxylic ester hydrolase activity
FPKM:2.23 TPM:1.00
3237 A_BomaMSG_c13489_g1_i1
240bp
FPKM:3.68 TPM:1.65
3238 A_BomaMSG_c13491_g1_i1
307bp
FPKM:2.57 TPM:1.15
3239 A_BomaMSG_c13492_g1_i1
741bp
probable_ATP-dependent_RNA_helicase_kurz_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0022008 P neurogenesis
GO:0044822 F RNA binding
FPKM:3.08 TPM:1.37
3240 A_BomaMSG_c13494_g1_i1
492bp
FPKM:2.56 TPM:1.14
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