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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3151 A_BomaMSG_c13405_g1_i1
448bp
zinc_finger_protein_454_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.81 TPM:0.81
3152 A_BomaMSG_c13406_g1_i1
402bp
PREDICTED:_coronin-6_isoform_X2_[Papilio_xuthus]
GO:0001725 C stress fiber
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0015629 C actin cytoskeleton
GO:0016477 P cell migration
GO:0030027 C lamellipodium
GO:0030036 P actin cytoskeleton organization
GO:0031252 C cell leading edge
GO:0031529 P ruffle organization
GO:0034316 P negative regulation of Arp2/3 complex-mediated actin nucleation
GO:0035767 P endothelial cell chemotaxis
GO:0036120 P cellular response to platelet-derived growth factor stimulus
GO:0042060 P wound healing
GO:0042802 F identical protein binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051015 F actin filament binding
GO:0051017 P actin filament bundle assembly
GO:0070062 C extracellular exosome
GO:0071672 P negative regulation of smooth muscle cell chemotaxis
GO:0071933 F Arp2/3 complex binding
GO:0071944 C cell periphery
GO:0090135 P actin filament branching
GO:1902463 P protein localization to cell leading edge
GO:2000394 P positive regulation of lamellipodium morphogenesis
FPKM:2.40 TPM:1.07
3153 A_BomaMSG_c13407_g1_i1
275bp
FPKM:2.68 TPM:1.20
3154 A_BomaMSG_c13408_g1_i1
320bp
FPKM:2.77 TPM:1.24
3155 A_BomaMSG_c1340_g1_i1
230bp
FPKM:2.47 TPM:1.10
3156 A_BomaMSG_c13410_g1_i1
442bp
LOW_QUALITY_PROTEIN:_serine/threonine-protein_kinase_WNK1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005912 C adherens junction
GO:0005923 C bicellular tight junction
GO:0006468 P protein phosphorylation
GO:0010765 P positive regulation of sodium ion transport
GO:0010800 P positive regulation of peptidyl-threonine phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019869 F chloride channel inhibitor activity
GO:0032414 P positive regulation of ion transmembrane transporter activity
GO:0035556 P intracellular signal transduction
GO:0043066 P negative regulation of apoptotic process
GO:0046777 P protein autophosphorylation
GO:0051928 P positive regulation of calcium ion transport
GO:0090004 P positive regulation of protein localization to plasma membrane
GO:0090188 P negative regulation of pancreatic juice secretion
GO:2000021 P ion homeostasis
GO:2000651 P positive regulation of sodium ion transmembrane transporter activity
GO:2000682 P obsolete positive regulation of rubidium ion transport
GO:2000688 P obsolete positive regulation of rubidium ion transmembrane transporter activity
FPKM:4.84 TPM:2.16
3157 A_BomaMSG_c13411_g1_i1
639bp
histone_acetyltransferase_KAT2A_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0000790 C chromatin
GO:0001701 P in utero embryonic development
GO:0001756 P somitogenesis
GO:0001843 P neural tube closure
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0008080 F N-acetyltransferase activity
GO:0008134 F transcription factor binding
GO:0008283 P cell population proliferation
GO:0010484 F H3 histone acetyltransferase activity
GO:0014070 P response to organic cyclic compound
GO:0016032 P viral process
GO:0016407 F acetyltransferase activity
GO:0016573 P histone acetylation
GO:0016578 P histone deubiquitination
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019903 F protein phosphatase binding
GO:0021537 P telencephalon development
GO:0022037 P metencephalon development
GO:0030901 P midbrain development
GO:0030914 C SAGA complex
GO:0031346 P positive regulation of cell projection organization
GO:0031647 P regulation of protein stability
GO:0031667 P response to nutrient levels
GO:0033276 C transcription factor TFTC complex
GO:0035066 P positive regulation of histone acetylation
GO:0035264 P multicellular organism growth
GO:0035948 P obsolete positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter
GO:0042826 F histone deacetylase binding
GO:0043966 P histone H3 acetylation
GO:0043983 P histone H4-K12 acetylation
GO:0043997 F histone acetyltransferase activity (H4-K12 specific)
GO:0044154 P histone H3-K14 acetylation
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0048312 P intracellular distribution of mitochondria
GO:0055007 P cardiac muscle cell differentiation
GO:0071356 P cellular response to tumor necrosis factor
GO:0071929 P alpha-tubulin acetylation
GO:0072686 C mitotic spindle
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903955 P positive regulation of protein targeting to mitochondrion
GO:1990090 P cellular response to nerve growth factor stimulus
GO:2000679 P positive regulation of transcription regulatory region DNA binding
FPKM:5.09 TPM:2.28
3158 A_BomaMSG_c13412_g1_i1
1858bp
uncharacterized_protein_LOC101735738_isoform_X3_[Bombyx_mori]
FPKM:29.41 TPM:13.14
3159 A_BomaMSG_c13414_g1_i1
1069bp
TATA-box-binding_protein_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
FPKM:4.91 TPM:2.19
3160 A_BomaMSG_c13415_g1_i1
324bp
FPKM:2.70 TPM:1.21
3161 A_BomaMSG_c13416_g1_i1
563bp
sin3_histone_deacetylase_corepressor_complex_component_SDS3_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016580 C Sin3 complex
GO:0019899 F enzyme binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0042826 F histone deacetylase binding
GO:0043065 P positive regulation of apoptotic process
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:2.12 TPM:0.95
3162 A_BomaMSG_c13417_g1_i1
240bp
FPKM:2.21 TPM:0.99
3163 A_BomaMSG_c13418_g1_i1
321bp
FPKM:5.89 TPM:2.63
3164 A_BomaMSG_c13419_g1_i1
665bp
FPKM:3.40 TPM:1.52
3165 A_BomaMSG_c1341_g1_i1
244bp
FPKM:4.24 TPM:1.89
3166 A_BomaMSG_c13420_g1_i1
668bp
uncharacterized_protein_LOC101744707_[Bombyx_mori]
FPKM:4.03 TPM:1.80
3167 A_BomaMSG_c13421_g1_i1
346bp
uncharacterized_protein_LOC105841396_[Bombyx_mori]
FPKM:3.09 TPM:1.38
3168 A_BomaMSG_c13422_g1_i1
311bp
alpha-(1,3)-fucosyltransferase_10_isoform_X1_[Bombyx_mori]
FPKM:7.92 TPM:3.54
3169 A_BomaMSG_c13423_g1_i1
601bp
signal_recognition_particle_subunit_SRP72_[Bombyx_mori]
GO:0005047 F signal recognition particle binding
GO:0005737 C cytoplasm
GO:0005786 C signal recognition particle, endoplasmic reticulum targeting
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0008312 F 7S RNA binding
GO:0030529 C ribonucleoprotein complex
GO:0048500 C signal recognition particle
FPKM:24.93 TPM:11.14
3170 A_BomaMSG_c13424_g1_i1
521bp
chromatin_assembly_factor_1_subunit_B_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006334 P nucleosome assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0031497 P chromatin assembly
GO:0033186 C CAF-1 complex
GO:0042393 F histone binding
FPKM:3.08 TPM:1.38
3171 A_BomaMSG_c13425_g1_i1
1340bp
protein_arginine_N-methyltransferase_7_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019918 P peptidyl-arginine methylation, to symmetrical-dimethyl arginine
GO:0019919 P peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0034969 P histone arginine methylation
GO:0035241 F protein-arginine omega-N monomethyltransferase activity
GO:0035242 F protein-arginine omega-N asymmetric methyltransferase activity
GO:0035243 F protein-arginine omega-N symmetric methyltransferase activity
FPKM:2.94 TPM:1.31
3172 A_BomaMSG_c13426_g1_i1
354bp
FPKM:3.29 TPM:1.47
3173 A_BomaMSG_c13427_g1_i1
700bp
C3_and_PZP-like_alpha-2-macroglobulin_domain-containing_protein_8_isoform_X2_[Bombyx_mori]
FPKM:2.57 TPM:1.15
3174 A_BomaMSG_c13429_g1_i1
221bp
SCY1-like_protein_2_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0004672 F protein kinase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0048471 C perinuclear region of cytoplasm
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000286 P receptor internalization involved in canonical Wnt signaling pathway
GO:2000370 P positive regulation of clathrin-dependent endocytosis
FPKM:8.28 TPM:3.70
3175 A_BomaMSG_c13430_g1_i1
260bp
putative_1-phosphatidylinositol_3-phosphate_5-kinase_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0000285 F 1-phosphatidylinositol-3-phosphate 5-kinase activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0008270 F zinc ion binding
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0012506 C vesicle membrane
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016307 F phosphatidylinositol phosphate kinase activity
GO:0016308 F 1-phosphatidylinositol-4-phosphate 5-kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
GO:0046488 P phosphatidylinositol metabolic process
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0046872 F metal ion binding
GO:0097352 P autophagosome maturation
FPKM:1.21 TPM:0.54
3176 A_BomaMSG_c13431_g1_i1
275bp
FPKM:3.75 TPM:1.68
3177 A_BomaMSG_c13433_g1_i1
215bp
raf_kinase,_effector_of_Ras_isoform_X1_[Bombyx_mori]
FPKM:8.97 TPM:4.01
3178 A_BomaMSG_c13434_g1_i1
277bp
glycosyltransferase_precursor_[Bombyx_mori]
GO:0001744 P insect visual primordium formation
GO:0005737 C cytoplasm
GO:0005887 C integral component of plasma membrane
GO:0006688 P glycosphingolipid biosynthetic process
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0007293 P germarium-derived egg chamber formation
GO:0007298 P border follicle cell migration
GO:0007299 P ovarian follicle cell-cell adhesion
GO:0007411 P axon guidance
GO:0008049 P male courtship behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0016333 P morphogenesis of follicular epithelium
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0019187 F beta-1,4-mannosyltransferase activity
GO:0030707 P ovarian follicle cell development
GO:0030720 P oocyte localization involved in germarium-derived egg chamber formation
GO:0033227 P dsRNA transport
GO:0042248 P maintenance of polarity of follicular epithelium
GO:0045165 P cell fate commitment
GO:0045434 P negative regulation of female receptivity, post-mating
GO:0046662 P regulation of oviposition
GO:0048477 P oogenesis
GO:0048935 P peripheral nervous system neuron development
GO:0097502 P mannosylation
FPKM:1.58 TPM:0.71
3179 A_BomaMSG_c13434_g2_i1
254bp
glycosyltransferase_precursor_[Bombyx_mori]
GO:0001744 P insect visual primordium formation
GO:0005737 C cytoplasm
GO:0005887 C integral component of plasma membrane
GO:0006688 P glycosphingolipid biosynthetic process
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0007293 P germarium-derived egg chamber formation
GO:0007298 P border follicle cell migration
GO:0007299 P ovarian follicle cell-cell adhesion
GO:0007411 P axon guidance
GO:0008049 P male courtship behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0016333 P morphogenesis of follicular epithelium
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0019187 F beta-1,4-mannosyltransferase activity
GO:0030707 P ovarian follicle cell development
GO:0030720 P oocyte localization involved in germarium-derived egg chamber formation
GO:0033227 P dsRNA transport
GO:0042248 P maintenance of polarity of follicular epithelium
GO:0045165 P cell fate commitment
GO:0045434 P negative regulation of female receptivity, post-mating
GO:0046662 P regulation of oviposition
GO:0048477 P oogenesis
GO:0048935 P peripheral nervous system neuron development
GO:0097502 P mannosylation
FPKM:1.92 TPM:0.86
3180 A_BomaMSG_c13437_g1_i1
552bp
adenomatous_polyposis_coli_protein_isoform_X1_[Bombyx_mori]
FPKM:3.01 TPM:1.35
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