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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
301 A_BomaMSG_c10390_g1_i1
1187bp
fragile_X_mental_retardation_syndrome-related_protein_1_homolog_A-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0030154 P cell differentiation
GO:0033592 F RNA strand annealing activity
GO:0042803 F protein homodimerization activity
GO:0046982 F protein heterodimerization activity
GO:2000637 P positive regulation of gene silencing by miRNA
FPKM:5.44 TPM:2.43
302 A_BomaMSG_c10390_g1_i2
441bp
synaptic_functional_regulator_FMR1-like_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0030154 P cell differentiation
GO:0033592 F RNA strand annealing activity
GO:0042803 F protein homodimerization activity
GO:0046982 F protein heterodimerization activity
GO:2000637 P positive regulation of gene silencing by miRNA
FPKM:1.07 TPM:0.48
303 A_BomaMSG_c10390_g1_i3
1205bp
fragile_X_mental_retardation_syndrome-related_protein_1_homolog_A-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0030154 P cell differentiation
GO:0033592 F RNA strand annealing activity
GO:0042803 F protein homodimerization activity
GO:0046982 F protein heterodimerization activity
GO:2000637 P positive regulation of gene silencing by miRNA
FPKM:21.87 TPM:9.77
304 A_BomaMSG_c10391_g1_i1
239bp
FPKM:3.72 TPM:1.66
305 A_BomaMSG_c10392_g1_i1
444bp
FPKM:3.89 TPM:1.74
306 A_BomaMSG_c10393_g1_i1
751bp
probable_Xaa-Pro_aminopeptidase_3_isoform_X1_[Bombyx_mori]
GO:0003094 P glomerular filtration
GO:0004177 F aminopeptidase activity
GO:0005739 C mitochondrion
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0030145 F manganese ion binding
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:3.92 TPM:1.75
307 A_BomaMSG_c10394_g1_i1
289bp
FPKM:2.41 TPM:1.08
308 A_BomaMSG_c10395_g1_i1
350bp
uncharacterized_protein_LOC101742281_isoform_X1_[Bombyx_mori]
FPKM:3.02 TPM:1.35
309 A_BomaMSG_c10396_g1_i1
455bp
FPKM:5.51 TPM:2.46
310 A_BomaMSG_c10397_g1_i1
380bp
FPKM:2.05 TPM:0.91
311 A_BomaMSG_c10398_g1_i1
944bp
uncharacterized_protein_LOC101743059_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0015129 F lactate transmembrane transporter activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035879 P plasma membrane lactate transport
GO:0055085 P transmembrane transport
FPKM:4.15 TPM:1.86
312 A_BomaMSG_c10398_g1_i2
558bp
uncharacterized_protein_LOC101743059_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0015129 F lactate transmembrane transporter activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035879 P plasma membrane lactate transport
GO:0055085 P transmembrane transport
FPKM:0.00 TPM:0.00
313 A_BomaMSG_c1039_g1_i1
249bp
FPKM:2.02 TPM:0.90
314 A_BomaMSG_c103_g1_i1
204bp
FPKM:4.69 TPM:2.10
315 A_BomaMSG_c10400_g1_i1
392bp
ARP6_actin-related_protein_6-like_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006338 P chromatin remodeling
FPKM:3.06 TPM:1.37
316 A_BomaMSG_c10401_g1_i1
439bp
FPKM:6.98 TPM:3.12
317 A_BomaMSG_c10402_g1_i1
459bp
FPKM:3.48 TPM:1.56
318 A_BomaMSG_c10404_g1_i1
214bp
FPKM:3.03 TPM:1.36
319 A_BomaMSG_c10405_g1_i1
248bp
FPKM:2.04 TPM:0.91
320 A_BomaMSG_c10406_g1_i1
515bp
uncharacterized_protein_LOC105841766_[Bombyx_mori]
FPKM:3.87 TPM:1.73
321 A_BomaMSG_c10407_g1_i1
1132bp
kelch-like_protein_diablo_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0005575 C cellular_component
GO:0016049 P cell growth
GO:0016567 P protein ubiquitination
GO:0050807 P regulation of synapse organization
FPKM:4.24 TPM:1.89
322 A_BomaMSG_c10408_g1_i1
804bp
E3_ubiquitin-protein_ligase_Topors_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005652 C nuclear lamina
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006997 P nucleus organization
GO:0007060 P male meiosis chromosome segregation
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007140 P male meiotic nuclear division
GO:0008270 F zinc ion binding
GO:0010032 P meiotic chromosome condensation
GO:0016568 P chromatin organization
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051299 P centrosome separation
GO:0061630 F ubiquitin protein ligase activity
GO:0071763 P nuclear membrane organization
FPKM:3.41 TPM:1.52
323 A_BomaMSG_c10408_g1_i2
731bp
E3_ubiquitin-protein_ligase_Topors_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005652 C nuclear lamina
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006997 P nucleus organization
GO:0007060 P male meiosis chromosome segregation
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007140 P male meiotic nuclear division
GO:0008270 F zinc ion binding
GO:0010032 P meiotic chromosome condensation
GO:0016568 P chromatin organization
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051299 P centrosome separation
GO:0061630 F ubiquitin protein ligase activity
GO:0071763 P nuclear membrane organization
FPKM:1.03 TPM:0.46
324 A_BomaMSG_c10409_g1_i1
382bp
FPKM:0.67 TPM:0.30
325 A_BomaMSG_c10409_g1_i2
401bp
FPKM:3.94 TPM:1.76
326 A_BomaMSG_c1040_g1_i1
326bp
putative_VPS9-ankyrin_repeat-containing_protein_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042470 C melanosome
FPKM:3.43 TPM:1.53
327 A_BomaMSG_c10410_g1_i1
598bp
FPKM:3.46 TPM:1.54
328 A_BomaMSG_c10411_g1_i1
261bp
FPKM:3.61 TPM:1.61
329 A_BomaMSG_c10412_g1_i1
503bp
FPKM:2.10 TPM:0.94
330 A_BomaMSG_c10414_g1_i1
451bp
nuclear_protein_localization_protein_4_homolog_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008270 F zinc ion binding
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0031625 F ubiquitin protein ligase binding
GO:0043130 F ubiquitin binding
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0098586 P cellular response to virus
FPKM:2.68 TPM:1.20
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