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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
271 A_BomaMSG_c10360_g1_i1
242bp
FPKM:7.21 TPM:3.22
272 A_BomaMSG_c10361_g1_i1
748bp
FPKM:3.49 TPM:1.56
273 A_BomaMSG_c10362_g1_i1
558bp
carboxylesterase_clade_H,_member_1_precursor_[Bombyx_mori]
GO:0002087 P regulation of respiratory gaseous exchange by nervous system process
GO:0004872 F signaling receptor activity
GO:0005615 C extracellular space
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006605 P protein targeting
GO:0007155 P cell adhesion
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007158 P neuron cell-cell adhesion
GO:0007399 P nervous system development
GO:0007416 P synapse assembly
GO:0009897 C external side of plasma membrane
GO:0009986 C cell surface
GO:0010841 P positive regulation of circadian sleep/wake cycle, wakefulness
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016080 P synaptic vesicle targeting
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0017146 C NMDA selective glutamate receptor complex
GO:0023041 P neuronal signal transduction
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0030425 C dendrite
GO:0031175 P neuron projection development
GO:0032230 P positive regulation of synaptic transmission, GABAergic
GO:0032433 C filopodium tip
GO:0035418 P protein localization to synapse
GO:0042043 F neurexin family protein binding
GO:0043197 C dendritic spine
GO:0043198 C dendritic shaft
GO:0045184 P establishment of protein localization
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0045664 P regulation of neuron differentiation
GO:0046983 F protein dimerization activity
GO:0048489 P synaptic vesicle transport
GO:0048511 P rhythmic process
GO:0048789 P cytoskeletal matrix organization at active zone
GO:0050804 P modulation of chemical synaptic transmission
GO:0050808 P synapse organization
GO:0050839 F cell adhesion molecule binding
GO:0051260 P protein homooligomerization
GO:0051290 P protein heterotetramerization
GO:0051491 P positive regulation of filopodium assembly
GO:0051965 P positive regulation of synapse assembly
GO:0051968 P positive regulation of synaptic transmission, glutamatergic
GO:0052689 F carboxylic ester hydrolase activity
GO:0060076 C excitatory synapse
GO:0060291 P long-term synaptic potentiation
GO:0060999 P positive regulation of dendritic spine development
GO:0061002 P negative regulation of dendritic spine morphogenesis
GO:0072553 P terminal button organization
GO:0097091 P synaptic vesicle clustering
GO:0097104 P postsynaptic membrane assembly
GO:0097105 P presynaptic membrane assembly
GO:0097110 F scaffold protein binding
GO:0097113 P AMPA glutamate receptor clustering
GO:0097114 P NMDA glutamate receptor clustering
GO:0097115 P neurexin clustering involved in presynaptic membrane assembly
GO:0097119 P postsynaptic density protein 95 clustering
GO:0097120 P receptor localization to synapse
GO:0097481 C postsynaptic density
GO:0098793 C presynapse
GO:1900029 P positive regulation of ruffle assembly
GO:1900244 P positive regulation of synaptic vesicle endocytosis
GO:1902474 P positive regulation of protein localization to synapse
GO:1902533 P positive regulation of intracellular signal transduction
GO:2000302 P positive regulation of synaptic vesicle exocytosis
GO:2000310 P regulation of NMDA receptor activity
GO:2000311 P regulation of AMPA receptor activity
GO:2000463 P positive regulation of excitatory postsynaptic potential
GO:2000809 P positive regulation of synaptic vesicle clustering
FPKM:3.13 TPM:1.40
274 A_BomaMSG_c10363_g1_i1
345bp
PREDICTED:_uncharacterized_protein_LOC107882391_[Acyrthosiphon_pisum]
FPKM:3.45 TPM:1.54
275 A_BomaMSG_c10364_g1_i1
345bp
LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
FPKM:3.45 TPM:1.54
276 A_BomaMSG_c10365_g1_i1
711bp
syntaxin-1A_isoform_X7_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0000281 P mitotic cytokinesis
GO:0005484 F SNAP receptor activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006906 P vesicle fusion
GO:0006936 P muscle contraction
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007274 P neuromuscular synaptic transmission
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007349 P cellularization
GO:0007482 P haltere development
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0017157 P regulation of exocytosis
GO:0031201 C SNARE complex
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0042335 P cuticle development
GO:0043195 C terminal bouton
GO:0048278 P vesicle docking
FPKM:2.16 TPM:0.97
277 A_BomaMSG_c10365_g1_i2
220bp
FPKM:0.00 TPM:0.00
278 A_BomaMSG_c10369_g1_i1
271bp
Group_1_glycosyl_transferase_[Operophtera_brumata]
FPKM:11.06 TPM:4.94
279 A_BomaMSG_c10370_g1_i1
224bp
ubiquitin_carboxyl-terminal_hydrolase_35_isoform_X2_[Bombyx_mori]
FPKM:0.76 TPM:0.34
280 A_BomaMSG_c10370_g1_i2
585bp
ubiquitin_carboxyl-terminal_hydrolase_35_isoform_X2_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006897 P endocytosis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0032153 C cell division site
GO:0034613 P cellular protein localization
GO:0036459 F thiol-dependent deubiquitinase
GO:0045013 P carbon catabolite repression of transcription
GO:0051286 C cell tip
FPKM:2.96 TPM:1.32
281 A_BomaMSG_c10371_g1_i1
671bp
uncharacterized_protein_LOC101744180_[Bombyx_mori]
FPKM:2.58 TPM:1.15
282 A_BomaMSG_c10372_g1_i1
524bp
Bloom_syndrome_protein_homolog_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000403 F Y-form DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0000733 P obsolete DNA strand renaturation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009378 F four-way junction helicase activity
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043140 F 3'-5' DNA helicase activity
GO:0044237 P cellular metabolic process
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
FPKM:2.16 TPM:0.96
283 A_BomaMSG_c10372_g1_i2
462bp
Bloom_syndrome_protein_homolog_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000403 F Y-form DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0000733 P obsolete DNA strand renaturation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009378 F four-way junction helicase activity
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043140 F 3'-5' DNA helicase activity
GO:0044237 P cellular metabolic process
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
FPKM:0.00 TPM:0.00
284 A_BomaMSG_c10374_g1_i1
311bp
dnaJ_homolog_subfamily_C_member_13_isoform_X3_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0007032 P endosome organization
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031901 C early endosome membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0070062 C extracellular exosome
GO:0071203 C WASH complex
GO:1902954 P regulation of early endosome to recycling endosome transport
GO:2000641 P regulation of early endosome to late endosome transport
FPKM:4.59 TPM:2.05
285 A_BomaMSG_c10375_g1_i1
238bp
WD_repeat-containing_protein_7-like_isoform_X2_[Bombyx_mori]
FPKM:1.51 TPM:0.67
286 A_BomaMSG_c10375_g1_i2
361bp
PREDICTED:_WD_repeat-containing_protein_7_[Papilio_polytes]
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0005737 C cytoplasm
GO:0008021 C synaptic vesicle
FPKM:5.10 TPM:2.28
287 A_BomaMSG_c10377_g1_i1
205bp
FPKM:2.31 TPM:1.03
288 A_BomaMSG_c10378_g1_i1
421bp
structure-specific_endonuclease_subunit_SLX4_[Bombyx_mori]
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007131 P reciprocal meiotic recombination
GO:0008283 P cell population proliferation
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0035825 P homologous recombination
GO:0043234 C protein-containing complex
GO:0045132 P meiotic chromosome segregation
FPKM:4.22 TPM:1.89
289 A_BomaMSG_c1037_g1_i1
243bp
Ras-related_GTP-binding_protein_A_[Salmo_salar]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0007050 P regulation of cell cycle
GO:0010506 P regulation of autophagy
GO:0016236 P macroautophagy
GO:0032006 P regulation of TOR signaling
GO:0032008 P positive regulation of TOR signaling
GO:0032561 F guanyl ribonucleotide binding
GO:0034198 P cellular response to amino acid starvation
GO:0034448 C Ragulator complex
GO:0034613 P cellular protein localization
GO:0043231 C intracellular membrane-bounded organelle
GO:0071230 P cellular response to amino acid stimulus
GO:1990131 C Gtr1-Gtr2 GTPase complex
FPKM:10.71 TPM:4.79
290 A_BomaMSG_c10380_g1_i1
742bp
uncharacterized_protein_LOC101746815_[Bombyx_mori]
FPKM:4.66 TPM:2.08
291 A_BomaMSG_c10381_g1_i1
326bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105841417,_partial_[Bombyx_mori]
FPKM:3.82 TPM:1.71
292 A_BomaMSG_c10382_g1_i1
402bp
metal_transporter_CNNM4_[Bombyx_mori]
FPKM:2.13 TPM:0.95
293 A_BomaMSG_c10383_g1_i1
392bp
FPKM:3.61 TPM:1.61
294 A_BomaMSG_c10384_g1_i1
737bp
uncharacterized_protein_LOC101736678_[Bombyx_mori]
GO:0002088 P lens development in camera-type eye
GO:0005212 F structural constituent of eye lens
GO:0005215 F transporter activity
GO:0005243 F gap junction channel activity
GO:0005516 F calmodulin binding
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005921 C gap junction
GO:0006810 P transport
GO:0006833 P water transport
GO:0007601 P visual perception
GO:0015250 F water channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0045785 P positive regulation of cell adhesion
GO:0050896 P response to stimulus
GO:0051289 P protein homotetramerization
GO:0055085 P transmembrane transport
GO:1990349 P gap junction-mediated intercellular transport
FPKM:21.79 TPM:9.74
295 A_BomaMSG_c10385_g1_i1
631bp
FPKM:2.66 TPM:1.19
296 A_BomaMSG_c10385_g2_i1
259bp
FPKM:3.68 TPM:1.64
297 A_BomaMSG_c10386_g1_i1
413bp
RING_finger_and_SPRY_domain-containing_protein_1_isoform_X2_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:4.86 TPM:2.17
298 A_BomaMSG_c10387_g1_i1
534bp
FPKM:8.06 TPM:3.60
299 A_BomaMSG_c10389_g1_i1
550bp
organic_cation_transporter_protein_[Bombyx_mori]
GO:0005275 F amine transmembrane transporter activity
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008340 P determination of adult lifespan
GO:0015101 F organic cation transmembrane transporter activity
GO:0015226 F carnitine transmembrane transporter activity
GO:0015695 P organic cation transport
GO:0015837 P amine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:1902603 P carnitine transmembrane transport
FPKM:3.87 TPM:1.73
300 A_BomaMSG_c1038_g1_i1
298bp
pre-mRNA_cleavage_complex_2_protein_Pcf11_[Bombyx_mori]
FPKM:6.35 TPM:2.84
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