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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
331 A_BomaMSG_c10415_g1_i1
434bp
coiled-coil_domain-containing_protein_85C-B_[Bombyx_mori]
GO:0007275 P multicellular organism development
FPKM:2.37 TPM:1.06
332 A_BomaMSG_c10416_g1_i1
337bp
uncharacterized_protein_LOC105842244_[Bombyx_mori]
FPKM:2.25 TPM:1.01
333 A_BomaMSG_c10417_g1_i1
211bp
FPKM:1.06 TPM:0.47
334 A_BomaMSG_c10418_g1_i1
825bp
pseudouridylate_synthase_7_homolog_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
GO:0019899 F enzyme binding
GO:0044822 F RNA binding
FPKM:2.89 TPM:1.29
335 A_BomaMSG_c10419_g1_i1
249bp
general_transcription_factor_IIH_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
FPKM:0.00 TPM:0.00
336 A_BomaMSG_c10419_g1_i2
566bp
general_transcription_factor_IIH_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
FPKM:4.05 TPM:1.81
337 A_BomaMSG_c1041_g1_i1
242bp
ribosomal_RNA-processing_protein_8_[Bombyx_mori]
GO:0000183 P rDNA heterochromatin assembly
GO:0005634 C nucleus
GO:0005677 C chromatin silencing complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0008757 F S-adenosylmethionine-dependent methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0033553 C rDNA heterochromatin
GO:0035064 F methylated histone binding
GO:0042149 P cellular response to glucose starvation
GO:0044822 F RNA binding
GO:0046015 P regulation of transcription by glucose
GO:0071158 P regulation of cell cycle
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
FPKM:7.21 TPM:3.22
338 A_BomaMSG_c10420_g1_i1
224bp
actin-related_protein_8_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0031011 C Ino80 complex
FPKM:3.54 TPM:1.58
339 A_BomaMSG_c10424_g1_i1
456bp
mpv17-like_protein_2_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:2.86 TPM:1.28
340 A_BomaMSG_c10425_g1_i1
757bp
condensin-2_complex_subunit_D3_isoform_X2_[Bombyx_mori]
GO:0000779 C condensed chromosome, centromeric region
GO:0000799 C condensin complex
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007076 P mitotic chromosome condensation
GO:0010032 P meiotic chromosome condensation
GO:0016020 C membrane
GO:0030261 P chromosome condensation
GO:0031618 C pericentric heterochromatin
GO:0035064 F methylated histone binding
GO:0051301 P cell division
GO:0051304 P chromosome separation
FPKM:2.33 TPM:1.04
341 A_BomaMSG_c10426_g1_i1
806bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101740083_[Bombyx_mori]
FPKM:2.26 TPM:1.01
342 A_BomaMSG_c10427_g1_i1
484bp
FPKM:4.63 TPM:2.07
343 A_BomaMSG_c10428_g1_i1
275bp
FPKM:1.61 TPM:0.72
344 A_BomaMSG_c10429_g1_i1
444bp
FPKM:2.06 TPM:0.92
345 A_BomaMSG_c10430_g1_i1
558bp
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X1_[Papilio_xuthus]
FPKM:2.80 TPM:1.25
346 A_BomaMSG_c10431_g1_i1
1155bp
FPKM:1.94 TPM:0.87
347 A_BomaMSG_c10432_g1_i1
287bp
LOW_QUALITY_PROTEIN:_cytokine_receptor_[Bombyx_mori]
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:6.36 TPM:2.84
348 A_BomaMSG_c10433_g1_i1
681bp
uncharacterized_protein_LOC101741655_isoform_X2_[Bombyx_mori]
FPKM:0.00 TPM:0.00
349 A_BomaMSG_c10433_g1_i2
653bp
uncharacterized_protein_LOC101741655_isoform_X2_[Bombyx_mori]
FPKM:1.61 TPM:0.72
350 A_BomaMSG_c10434_g1_i1
858bp
tRNA_(guanine-N(7)-)-methyltransferase_non-catalytic_subunit_wuho_[Bombyx_mori]
GO:0001673 C male germ cell nucleus
GO:0001674 C female germ cell nucleus
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008033 P tRNA processing
GO:0030154 P cell differentiation
GO:0030488 P tRNA methylation
GO:0036265 P RNA (guanine-N7)-methylation
GO:0048477 P oogenesis
FPKM:5.23 TPM:2.34
351 A_BomaMSG_c10435_g1_i1
266bp
ribosome-releasing_factor_2,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0032543 P mitochondrial translation
GO:0032790 P ribosome disassembly
FPKM:2.31 TPM:1.03
352 A_BomaMSG_c10436_g1_i1
571bp
LOW_QUALITY_PROTEIN:_facilitated_trehalose_transporter_Tret1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:2.72 TPM:1.21
353 A_BomaMSG_c10437_g1_i1
469bp
E2F_transcription_factor_1_[Bombyx_mori]
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008134 F transcription factor binding
GO:0051726 P regulation of cell cycle
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:1990086 P lens fiber cell apoptotic process
FPKM:4.43 TPM:1.98
354 A_BomaMSG_c10439_g1_i1
433bp
FPKM:2.85 TPM:1.27
355 A_BomaMSG_c1043_g1_i1
521bp
FPKM:4.72 TPM:2.11
356 A_BomaMSG_c10440_g1_i1
653bp
uncharacterized_protein_C18orf19_homolog_A_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:4.82 TPM:2.15
357 A_BomaMSG_c10441_g1_i1
560bp
FPKM:3.28 TPM:1.47
358 A_BomaMSG_c10442_g1_i1
634bp
FPKM:4.87 TPM:2.18
359 A_BomaMSG_c10443_g1_i1
1139bp
LOW_QUALITY_PROTEIN:_supporter_of_activation_of_yellow_protein_[Bombyx_mori]
FPKM:3.06 TPM:1.37
360 A_BomaMSG_c10444_g1_i1
550bp
FPKM:3.37 TPM:1.50
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