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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2791 A_BomaMSG_c13005_g1_i1
475bp
histone-arginine_methyltransferase_CARMER_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0019919 P peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0034969 P histone arginine methylation
GO:0035241 F protein-arginine omega-N monomethyltransferase activity
GO:0035242 F protein-arginine omega-N asymmetric methyltransferase activity
GO:0042054 F histone methyltransferase activity
FPKM:3.52 TPM:1.57
2792 A_BomaMSG_c13006_g1_i1
610bp
mitochondrial_aldehyde_dehydrogenase_[Bombyx_mori]
GO:0004029 F aldehyde dehydrogenase (NAD+) activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006068 P ethanol catabolic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0055114 P obsolete oxidation-reduction process
FPKM:3.07 TPM:1.37
2793 A_BomaMSG_c13007_g1_i1
275bp
FPKM:3.21 TPM:1.44
2794 A_BomaMSG_c1300_g1_i1
238bp
uncharacterized_protein_LOC110385005,_partial_[Bombyx_mori]
FPKM:5.27 TPM:2.35
2795 A_BomaMSG_c13010_g1_i1
433bp
FPKM:0.89 TPM:0.40
2796 A_BomaMSG_c13010_g1_i2
329bp
FPKM:5.73 TPM:2.56
2797 A_BomaMSG_c13015_g1_i1
338bp
acetyl-CoA_carboxylase_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003989 F acetyl-CoA carboxylase activity
GO:0004075 F biotin carboxylase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006084 P acetyl-CoA metabolic process
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008152 P metabolic process
GO:0010629 P negative regulation of gene expression
GO:0010884 P positive regulation of lipid storage
GO:0010906 P regulation of glucose metabolic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016874 F ligase activity
GO:0031667 P response to nutrient levels
GO:0031999 P negative regulation of fatty acid beta-oxidation
GO:0043086 P negative regulation of catalytic activity
GO:0046322 P negative regulation of fatty acid oxidation
GO:0046872 F metal ion binding
GO:0050995 P negative regulation of lipid catabolic process
GO:0051289 P protein homotetramerization
GO:0060421 P positive regulation of heart growth
GO:0097009 P energy homeostasis
GO:2001295 P malonyl-CoA biosynthetic process
FPKM:2.86 TPM:1.28
2798 A_BomaMSG_c13016_g1_i1
431bp
FPKM:5.27 TPM:2.35
2799 A_BomaMSG_c13018_g1_i1
248bp
FPKM:4.07 TPM:1.82
2800 A_BomaMSG_c13019_g1_i1
227bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101741510_[Bombyx_mori]
FPKM:6.83 TPM:3.05
2801 A_BomaMSG_c1301_g1_i1
279bp
SET_and_MYND_domain-containing_protein_4_[Bombyx_mori]
FPKM:3.12 TPM:1.39
2802 A_BomaMSG_c13020_g1_i1
316bp
LOW_QUALITY_PROTEIN:_tuberin_[Bombyx_mori]
GO:0001843 P neural tube closure
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006469 P negative regulation of protein kinase activity
GO:0006606 P protein import into nucleus
GO:0006897 P endocytosis
GO:0007050 P regulation of cell cycle
GO:0007507 P heart development
GO:0008104 P protein localization
GO:0008285 P negative regulation of cell population proliferation
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016192 P vesicle-mediated transport
GO:0019902 F phosphatase binding
GO:0030100 P regulation of endocytosis
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0031267 F small GTPase binding
GO:0032007 P negative regulation of TOR signaling
GO:0033596 C TSC1-TSC2 complex
GO:0042803 F protein homodimerization activity
GO:0043491 P protein kinase B signaling
GO:0043547 P positive regulation of GTPase activity
GO:0046626 P regulation of insulin receptor signaling pathway
GO:0046627 P negative regulation of insulin receptor signaling pathway
GO:0048009 P insulin-like growth factor receptor signaling pathway
GO:0048471 C perinuclear region of cytoplasm
GO:0050918 P positive chemotaxis
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0051726 P regulation of cell cycle
GO:0051898 P negative regulation of protein kinase B signaling
FPKM:4.45 TPM:1.99
2803 A_BomaMSG_c13021_g1_i1
331bp
FPKM:5.20 TPM:2.32
2804 A_BomaMSG_c13022_g1_i1
388bp
FPKM:3.11 TPM:1.39
2805 A_BomaMSG_c13023_g1_i1
242bp
FPKM:12.26 TPM:5.48
2806 A_BomaMSG_c13025_g1_i1
274bp
FPKM:3.24 TPM:1.45
2807 A_BomaMSG_c13026_g1_i1
269bp
FPKM:6.75 TPM:3.01
2808 A_BomaMSG_c13027_g1_i1
336bp
uncharacterized_protein_LOC101740358_isoform_X1_[Bombyx_mori]
GO:0001658 P branching involved in ureteric bud morphogenesis
GO:0001736 P establishment of planar polarity
GO:0001822 P kidney development
GO:0003007 P heart morphogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0007009 P plasma membrane organization
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007219 P Notch signaling pathway
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021987 P cerebral cortex development
GO:0022008 P neurogenesis
GO:0035329 P hippo signaling
GO:0043931 P ossification involved in bone maturation
GO:0045177 C apical part of cell
GO:0048565 P digestive tract development
GO:0060122 P inner ear receptor cell stereocilium organization
GO:0070062 C extracellular exosome
GO:0072006 P nephron development
GO:0072137 P condensed mesenchymal cell proliferation
GO:0072307 P regulation of metanephric nephron tubule epithelial cell differentiation
FPKM:4.33 TPM:1.94
2809 A_BomaMSG_c13028_g1_i1
219bp
FPKM:0.94 TPM:0.42
2810 A_BomaMSG_c13029_g1_i1
410bp
FPKM:2.59 TPM:1.16
2811 A_BomaMSG_c1302_g1_i1
551bp
mediator_of_RNA_polymerase_II_transcription_subunit_1_[Bombyx_mori]
FPKM:2.35 TPM:1.05
2812 A_BomaMSG_c13030_g1_i1
485bp
serine/arginine_repetitive_matrix_protein_2_[Bombyx_mori]
FPKM:10.44 TPM:4.67
2813 A_BomaMSG_c13031_g1_i1
256bp
FPKM:4.41 TPM:1.97
2814 A_BomaMSG_c13032_g1_i1
452bp
FPKM:3.79 TPM:1.69
2815 A_BomaMSG_c13033_g1_i1
325bp
FPKM:4.61 TPM:2.06
2816 A_BomaMSG_c13034_g1_i1
382bp
trichoplein_keratin_filament-binding_protein_[Bombyx_mori]
FPKM:3.77 TPM:1.68
2817 A_BomaMSG_c13035_g1_i1
212bp
PREDICTED:_uncharacterized_protein_LOC107172630,_partial_[Diuraphis_noxia]
FPKM:3.12 TPM:1.39
2818 A_BomaMSG_c13036_g1_i1
824bp
RNA_pseudouridylate_synthase_domain-containing_protein_2_isoform_X4_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0019239 F deaminase activity
GO:0031119 P tRNA pseudouridine synthesis
GO:0044822 F RNA binding
FPKM:3.40 TPM:1.52
2819 A_BomaMSG_c13037_g1_i1
349bp
FPKM:3.04 TPM:1.36
2820 A_BomaMSG_c13038_g1_i1
243bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
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