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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2761 A_BomaMSG_c12970_g1_i1
242bp
FPKM:3.61 TPM:1.61
2762 A_BomaMSG_c12971_g1_i1
656bp
gastrula_zinc_finger_protein_XlCGF57.1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0008150 P biological_process
GO:0046872 F metal ion binding
FPKM:1.86 TPM:0.83
2763 A_BomaMSG_c12972_g1_i1
411bp
FPKM:5.41 TPM:2.42
2764 A_BomaMSG_c12973_g1_i1
374bp
polyribonucleotide_nucleotidyltransferase_1,_mitochondrial_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000957 P mitochondrial RNA catabolic process
GO:0000958 P mitochondrial mRNA catabolic process
GO:0000962 P positive regulation of mitochondrial RNA catabolic process
GO:0000964 P mitochondrial RNA 5'-end processing
GO:0000965 P mitochondrial RNA 3'-end processing
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004654 F polyribonucleotide nucleotidyltransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0006810 P transport
GO:0008266 F poly(U) RNA binding
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0034046 F poly(G) binding
GO:0034599 P cellular response to oxidative stress
GO:0035198 F miRNA binding
GO:0035458 P cellular response to interferon-beta
GO:0035927 P RNA import into mitochondrion
GO:0035928 P rRNA import into mitochondrion
GO:0043457 P regulation of cellular respiration
GO:0043631 P RNA polyadenylation
GO:0044822 F RNA binding
GO:0045025 C mitochondrial degradosome
GO:0045926 P negative regulation of growth
GO:0051260 P protein homooligomerization
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070207 P protein homotrimerization
GO:0070584 P mitochondrion morphogenesis
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222 P mitochondrial mRNA polyadenylation
GO:2000627 P positive regulation of miRNA catabolic process
GO:2000772 P regulation of cellular senescence
FPKM:2.10 TPM:0.94
2765 A_BomaMSG_c12974_g1_i1
545bp
dedicator_of_cytokinesis_protein_7_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007264 P small GTPase mediated signal transduction
GO:0007596 P blood coagulation
GO:0043547 P positive regulation of GTPase activity
GO:0048471 C perinuclear region of cytoplasm
FPKM:2.73 TPM:1.22
2766 A_BomaMSG_c12975_g1_i1
340bp
uncharacterized_protein_LOC101746966_isoform_X1_[Bombyx_mori]
FPKM:1.06 TPM:0.47
2767 A_BomaMSG_c12976_g1_i1
512bp
FPKM:6.32 TPM:2.82
2768 A_BomaMSG_c12977_g1_i1
382bp
eukaryotic_translation_initiation_factor_4E_transporter_[Bombyx_mori]
FPKM:5.80 TPM:2.59
2769 A_BomaMSG_c12978_g1_i1
475bp
zinc_transporter_ZIP10_[Bombyx_mori]
GO:0002903 P negative regulation of B cell apoptotic process
GO:0005385 F zinc ion transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006829 P zinc ion transport
GO:0006882 P cellular zinc ion homeostasis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030001 P metal ion transport
GO:0030890 P positive regulation of B cell proliferation
GO:0046873 F metal ion transmembrane transporter activity
GO:0050861 P positive regulation of B cell receptor signaling pathway
GO:0055085 P transmembrane transport
GO:0071578 P zinc ion import across plasma membrane
GO:1903615 P positive regulation of protein tyrosine phosphatase activity
FPKM:1.86 TPM:0.83
2770 A_BomaMSG_c12979_g1_i1
260bp
post-GPI_attachment_to_proteins_factor_2-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006506 P GPI anchor biosynthetic process
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:4.25 TPM:1.90
2771 A_BomaMSG_c1297_g1_i1
362bp
syntaxin-1A_[Bombyx_mori]
FPKM:7.29 TPM:3.26
2772 A_BomaMSG_c12980_g1_i1
546bp
serine/threonine-protein_kinase_TBK1_[Bombyx_mori]
FPKM:5.27 TPM:2.35
2773 A_BomaMSG_c12981_g1_i1
237bp
FPKM:6.09 TPM:2.72
2774 A_BomaMSG_c12983_g1_i1
368bp
FPKM:3.08 TPM:1.38
2775 A_BomaMSG_c12984_g1_i1
1164bp
uncharacterized_protein_LOC101737130_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
FPKM:3.33 TPM:1.49
2776 A_BomaMSG_c12985_g1_i1
1011bp
FPKM:4.69 TPM:2.10
2777 A_BomaMSG_c12986_g1_i1
273bp
FPKM:10.88 TPM:4.86
2778 A_BomaMSG_c12988_g1_i1
352bp
PREDICTED:_uncharacterized_protein_LOC106710629_[Papilio_machaon]
FPKM:1.33 TPM:0.59
2779 A_BomaMSG_c1298_g1_i1
345bp
FPKM:0.34 TPM:0.15
2780 A_BomaMSG_c12993_g1_i1
347bp
G_patch_domain-containing_protein_1_homolog_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006397 P mRNA processing
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:2.73 TPM:1.22
2781 A_BomaMSG_c12993_g1_i2
213bp
G_patch_domain-containing_protein_1_homolog_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006397 P mRNA processing
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:0.00 TPM:0.00
2782 A_BomaMSG_c12994_g1_i1
480bp
F-actin-uncapping_protein_LRRC16A_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007015 P actin filament organization
GO:0007596 P blood coagulation
GO:0016020 C membrane
GO:0016477 P cell migration
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0030335 P positive regulation of cell migration
GO:0030838 P positive regulation of actin filament polymerization
GO:0031252 C cell leading edge
GO:0031529 P ruffle organization
GO:0031941 C filamentous actin
GO:0032403 F protein-containing complex binding
GO:0042995 C cell projection
GO:0044351 P macropinocytosis
GO:0044354 C macropinosome
GO:0046415 P urate metabolic process
GO:0051496 P positive regulation of stress fiber assembly
GO:0051638 P barbed-end actin filament uncapping
GO:0051639 P actin filament network formation
GO:0070062 C extracellular exosome
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1902745 P positive regulation of lamellipodium organization
GO:2000813 P negative regulation of barbed-end actin filament capping
FPKM:3.67 TPM:1.64
2783 A_BomaMSG_c12997_g1_i1
384bp
FPKM:0.86 TPM:0.39
2784 A_BomaMSG_c12997_g2_i1
295bp
protein_SCO1_homolog,_mitochondrial_[Bombyx_mori]
GO:0005507 F copper ion binding
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006091 P generation of precursor metabolites and energy
GO:0006825 P copper ion transport
GO:0006878 P cellular copper ion homeostasis
GO:0008535 P respiratory chain complex IV assembly
GO:0030016 C myofibril
GO:0046872 F metal ion binding
GO:0072492 C host cell mitochondrial intermembrane space
FPKM:3.24 TPM:1.45
2785 A_BomaMSG_c1299_g1_i1
229bp
transcriptional_adapter_2B_isoform_X2_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007412 P axon target recognition
GO:0008270 F zinc ion binding
GO:0016573 P histone acetylation
GO:0035066 P positive regulation of histone acetylation
GO:0035079 P polytene chromosome puffing
GO:0035222 P wing disc pattern formation
GO:0043966 P histone H3 acetylation
GO:0046872 F metal ion binding
GO:2000331 P regulation of terminal button organization
FPKM:0.83 TPM:0.37
2786 A_BomaMSG_c129_g1_i1
266bp
FPKM:2.31 TPM:1.03
2787 A_BomaMSG_c13000_g1_i1
371bp
ribosomal_protein_S6_kinase_alpha-3-like_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004712 F protein serine/threonine/tyrosine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
GO:0043027 F cysteine-type endopeptidase inhibitor activity involved in apoptotic process
GO:0043066 P negative regulation of apoptotic process
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:2000491 P positive regulation of hepatic stellate cell activation
FPKM:2.74 TPM:1.22
2788 A_BomaMSG_c13001_g1_i1
231bp
PREDICTED:_uncharacterized_protein_LOC106711875_[Papilio_machaon]
FPKM:5.70 TPM:2.55
2789 A_BomaMSG_c13003_g1_i1
411bp
FPKM:2.32 TPM:1.04
2790 A_BomaMSG_c13004_g1_i1
372bp
anaphase-promoting_complex_subunit_2_[Bombyx_mori]
FPKM:6.96 TPM:3.11
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