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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2821 A_BomaMSG_c13038_g1_i2
288bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:7.29 TPM:3.26
2822 A_BomaMSG_c13039_g1_i1
256bp
FPKM:3.78 TPM:1.69
2823 A_BomaMSG_c1303_g1_i1
383bp
prestin_isoform_X3_[Bombyx_mori]
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006811 P ion transport
GO:0006820 P anion transport
GO:0006821 P chloride transport
GO:0008271 F secondary active sulfate transmembrane transporter activity
GO:0008272 P sulfate transport
GO:0009986 C cell surface
GO:0010628 P positive regulation of gene expression
GO:0015106 F bicarbonate transmembrane transporter activity
GO:0015116 F sulfate transmembrane transporter activity
GO:0015301 F anion:anion antiporter activity
GO:0015701 P bicarbonate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0019531 F oxalate transmembrane transporter activity
GO:0019532 P oxalate transport
GO:0042391 P regulation of membrane potential
GO:0051117 F ATPase binding
GO:0051453 P regulation of intracellular pH
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
GO:0098656 P anion transmembrane transport
GO:1902358 P sulfate transmembrane transport
GO:1902476 P chloride transmembrane transport
FPKM:4.33 TPM:1.93
2824 A_BomaMSG_c13041_g1_i1
260bp
FPKM:6.07 TPM:2.71
2825 A_BomaMSG_c13042_g1_i1
482bp
hypothetical_protein_WCM_04769,_partial_[Escherichia_coli_KTE10]
FPKM:1.62 TPM:0.72
2826 A_BomaMSG_c13044_g1_i1
297bp
FPKM:10.95 TPM:4.89
2827 A_BomaMSG_c13045_g1_i1
326bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.91 TPM:0.85
2828 A_BomaMSG_c13046_g1_i1
642bp
helicase_ARIP4-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:1.92 TPM:0.86
2829 A_BomaMSG_c13047_g1_i1
332bp
FPKM:7.38 TPM:3.30
2830 A_BomaMSG_c13047_g2_i1
275bp
FPKM:5.36 TPM:2.39
2831 A_BomaMSG_c13048_g1_i1
303bp
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X4_[Papilio_machaon]
FPKM:3.95 TPM:1.76
2832 A_BomaMSG_c13049_g1_i1
349bp
lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Helicoverpa_armigera]
GO:0001817 P regulation of cytokine production
GO:0004871 F obsolete signal transducer activity
GO:0005576 C extracellular region
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0007568 P aging
GO:0016020 C membrane
GO:0032496 P response to lipopolysaccharide
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 C intracellular membrane-bounded organelle
GO:0050699 F WW domain binding
GO:0071222 P cellular response to lipopolysaccharide
FPKM:5.40 TPM:2.41
2833 A_BomaMSG_c1304_g1_i1
272bp
hypothetical_protein_OBRU01_06171_[Operophtera_brumata]
FPKM:1.10 TPM:0.49
2834 A_BomaMSG_c13050_g1_i1
564bp
methyltransferase-like_protein_9_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.28 TPM:1.02
2835 A_BomaMSG_c13050_g1_i2
403bp
methyltransferase-like_protein_9_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:0.00 TPM:0.00
2836 A_BomaMSG_c13051_g1_i1
379bp
FPKM:4.11 TPM:1.84
2837 A_BomaMSG_c13052_g1_i1
287bp
unconventional_myosin-IXa_isoform_X1_[Bombyx_mori]
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0001726 C ruffle
GO:0002548 P monocyte chemotaxis
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005096 F GTPase activator activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005938 C cell cortex
GO:0007165 P signal transduction
GO:0007266 P Rho protein signal transduction
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016459 C myosin complex
GO:0016887 F ATP hydrolysis activity
GO:0017048 F small GTPase binding
GO:0030010 P establishment of cell polarity
GO:0030027 C lamellipodium
GO:0030048 P actin filament-based movement
GO:0030898 F microfilament motor activity
GO:0032433 C filopodium tip
GO:0033275 P actin-myosin filament sliding
GO:0035023 P regulation of Rho protein signal transduction
GO:0035385 P Roundabout signaling pathway
GO:0035556 P intracellular signal transduction
GO:0043531 F ADP binding
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:0048246 P macrophage chemotaxis
GO:0048471 C perinuclear region of cytoplasm
GO:0048495 F Roundabout binding
GO:0051015 F actin filament binding
GO:0072673 P lamellipodium morphogenesis
FPKM:2.94 TPM:1.31
2838 A_BomaMSG_c13053_g1_i1
260bp
uncharacterized_protein_LOC101742435_[Bombyx_mori]
FPKM:7.28 TPM:3.26
2839 A_BomaMSG_c13054_g1_i1
220bp
FPKM:0.00 TPM:0.00
2840 A_BomaMSG_c13055_g1_i1
500bp
leucine-zipper-like_transcriptional_regulator_1_[Bombyx_mori]
GO:0005794 C Golgi apparatus
FPKM:3.27 TPM:1.46
2841 A_BomaMSG_c13056_g1_i1
285bp
FPKM:10.43 TPM:4.66
2842 A_BomaMSG_c13057_g1_i1
530bp
eukaryotic_translation_initiation_factor_5B-like_[Bombyx_mori]
FPKM:2.13 TPM:0.95
2843 A_BomaMSG_c1305_g1_i1
485bp
FPKM:5.83 TPM:2.60
2844 A_BomaMSG_c13060_g1_i1
420bp
vacuolar_fusion_protein_MON1_homolog_A_[Bombyx_mori]
GO:0009306 P protein secretion
GO:0012505 C endomembrane system
GO:0016192 P vesicle-mediated transport
FPKM:3.24 TPM:1.45
2845 A_BomaMSG_c13060_g2_i1
404bp
protein_SAND_[Helicoverpa_armigera]
GO:0009306 P protein secretion
GO:0012505 C endomembrane system
GO:0016192 P vesicle-mediated transport
FPKM:1.85 TPM:0.83
2846 A_BomaMSG_c13061_g1_i1
252bp
FPKM:5.23 TPM:2.34
2847 A_BomaMSG_c13064_g1_i1
659bp
histone_lysine_demethylase_PHF8_[Bombyx_mori]
FPKM:1.59 TPM:0.71
2848 A_BomaMSG_c13065_g1_i1
341bp
forkhead_box_protein_K1,_partial_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0030154 P cell differentiation
GO:0030308 P negative regulation of cell growth
GO:0043565 F sequence-specific DNA binding
GO:0045786 P negative regulation of cell cycle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
FPKM:3.87 TPM:1.73
2849 A_BomaMSG_c13067_g1_i1
309bp
ribosomal_protein_P1_[Bombyx_mori]
GO:0002181 P cytoplasmic translation
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006414 P translational elongation
GO:0022625 C cytosolic large ribosomal subunit
GO:0030295 F protein kinase activator activity
GO:0030529 C ribonucleoprotein complex
GO:0030687 C preribosome, large subunit precursor
GO:0032147 P activation of protein kinase activity
GO:0045860 P positive regulation of protein kinase activity
GO:0070180 F large ribosomal subunit rRNA binding
FPKM:11.40 TPM:5.09
2850 A_BomaMSG_c13068_g1_i1
496bp
FPKM:1.36 TPM:0.61
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