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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
241 A_BomaMSG_c10311_g1_i1
211bp
uncharacterized_protein_LOC101741811_[Bombyx_mori]
FPKM:9.50 TPM:4.24
242 A_BomaMSG_c10312_g1_i1
208bp
FPKM:69378.65 TPM:31003.49
243 A_BomaMSG_c10313_g1_i1
243bp
sialin_isoform_X1_[Bombyx_mori]
FPKM:4.28 TPM:1.91
244 A_BomaMSG_c10314_g1_i1
256bp
FPKM:3.78 TPM:1.69
245 A_BomaMSG_c10316_g1_i1
253bp
putative_bric-a-brac_[Operophtera_brumata]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001709 P cell fate determination
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007298 P border follicle cell migration
GO:0007422 P peripheral nervous system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008360 P regulation of cell shape
GO:0016476 P regulation of embryonic cell shape
GO:0017053 C transcription repressor complex
GO:0030707 P ovarian follicle cell development
GO:0031208 F POZ domain binding
GO:0031987 P locomotion involved in locomotory behavior
GO:0035001 P dorsal trunk growth, open tracheal system
GO:0035147 P branch fusion, open tracheal system
GO:0035151 P regulation of tube size, open tracheal system
GO:0040003 P chitin-based cuticle development
GO:0042675 P compound eye cone cell differentiation
GO:0042682 P regulation of compound eye cone cell fate specification
GO:0042803 F protein homodimerization activity
GO:0043388 P positive regulation of DNA binding
GO:0045467 P R7 cell development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046843 P dorsal appendage formation
GO:0046872 F metal ion binding
GO:0048053 P R1/R6 development
GO:0048666 P neuron development
GO:0048750 P compound eye corneal lens morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0048854 P brain morphogenesis
GO:0060446 P branching involved in open tracheal system development
FPKM:4.53 TPM:2.02
246 A_BomaMSG_c1031_g1_i1
625bp
DNA-directed_RNA_polymerase_II_subunit_RPB9_[Bombyx_mori]
GO:0001193 P maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005730 C nucleolus
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007067 P mitotic cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0008270 F zinc ion binding
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
FPKM:29.20 TPM:13.05
247 A_BomaMSG_c10325_g1_i1
367bp
FPKM:1.86 TPM:0.83
248 A_BomaMSG_c10326_g1_i1
238bp
FPKM:2.26 TPM:1.01
249 A_BomaMSG_c10327_g1_i1
253bp
FPKM:2.59 TPM:1.16
250 A_BomaMSG_c10328_g1_i1
267bp
FPKM:2.86 TPM:1.28
251 A_BomaMSG_c10328_g2_i1
304bp
FPKM:1.74 TPM:0.78
252 A_BomaMSG_c10330_g1_i1
219bp
FPKM:1.89 TPM:0.84
253 A_BomaMSG_c10332_g1_i1
343bp
uncharacterized_protein_LOC105842596_[Bombyx_mori]
FPKM:2.44 TPM:1.09
254 A_BomaMSG_c10335_g1_i1
206bp
sorting_and_assembly_machinery_component_50_homolog_A_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019867 C outer membrane
GO:0042407 P cristae formation
FPKM:7.96 TPM:3.56
255 A_BomaMSG_c1033_g1_i1
207bp
probable_ATP-dependent_RNA_helicase_DDX55_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
FPKM:0.00 TPM:0.00
256 A_BomaMSG_c1033_g1_i2
224bp
probable_ATP-dependent_RNA_helicase_DDX55_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
FPKM:1.77 TPM:0.79
257 A_BomaMSG_c10347_g1_i1
268bp
1-phosphatidylinositol_3-phosphate_5-kinase_isoform_X3_[Bombyx_mori]
FPKM:2.27 TPM:1.01
258 A_BomaMSG_c10348_g1_i1
257bp
FPKM:4.37 TPM:1.95
259 A_BomaMSG_c1034_g1_i1
215bp
FPKM:2.99 TPM:1.34
260 A_BomaMSG_c10350_g1_i1
213bp
FPKM:5.13 TPM:2.29
261 A_BomaMSG_c10352_g1_i1
224bp
FPKM:3.54 TPM:1.58
262 A_BomaMSG_c10353_g1_i1
374bp
hypothetical_protein_CDL37_04775,_partial_[Escherichia_coli]
GO:0005739 C mitochondrion
FPKM:27.37 TPM:12.23
263 A_BomaMSG_c10353_g1_i2
446bp
hypothetical_protein_CDL37_04775,_partial_[Escherichia_coli]
GO:0005739 C mitochondrion
FPKM:3.13 TPM:1.40
264 A_BomaMSG_c10354_g1_i1
476bp
FPKM:2.48 TPM:1.11
265 A_BomaMSG_c10355_g1_i1
819bp
protein_mothers_against_dpp_[Bombyx_mori]
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001105 F transcription coactivator activity
GO:0001745 P compound eye morphogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007391 P dorsal closure
GO:0007419 P ventral cord development
GO:0007424 P open tracheal system development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007488 P histoblast morphogenesis
GO:0007507 P heart development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0010629 P negative regulation of gene expression
GO:0030618 F obsolete transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity
GO:0030707 P ovarian follicle cell development
GO:0030718 P germ-line stem cell population maintenance
GO:0035019 P somatic stem cell population maintenance
GO:0035290 P trunk segmentation
GO:0042078 P germ-line stem cell division
GO:0043565 F sequence-specific DNA binding
GO:0045595 P regulation of cell differentiation
GO:0045705 P negative regulation of salivary gland boundary specification
GO:0045887 P positive regulation of synaptic assembly at neuromuscular junction
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048100 P wing disc anterior/posterior pattern formation
GO:0050803 P regulation of synapse structure or activity
GO:0060799 P transforming growth factor beta receptor signaling pathway involved in endodermal cell fate specification
GO:0061353 P BMP signaling pathway involved in Malpighian tubule cell chemotaxis
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
FPKM:2.21 TPM:0.99
266 A_BomaMSG_c10356_g1_i1
304bp
uncharacterized_protein_LOC101738513_[Bombyx_mori]
FPKM:5.23 TPM:2.34
267 A_BomaMSG_c10357_g1_i1
233bp
PREDICTED:_uncharacterized_protein_LOC106123055,_partial_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:1.59 TPM:0.71
268 A_BomaMSG_c10358_g1_i1
223bp
FPKM:7.17 TPM:3.21
269 A_BomaMSG_c10359_g1_i1
713bp
calcium_uptake_protein_1_homolog,_mitochondrial_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0046872 F metal ion binding
GO:0051561 P positive regulation of mitochondrial calcium ion concentration
FPKM:4.42 TPM:1.98
270 A_BomaMSG_c1035_g1_i1
274bp
FPKM:0.54 TPM:0.24
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