SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/42653
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2701 A_BomaMSG_c1290_g1_i1
482bp
uncharacterized_protein_LOC101736380_[Bombyx_mori]
FPKM:1.22 TPM:0.54
2702 A_BomaMSG_c12910_g1_i1
824bp
phosphoglucomutase_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0004614 F phosphoglucomutase activity
GO:0004619 F phosphoglycerate mutase activity
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0005978 P glycogen biosynthetic process
GO:0006006 P glucose metabolic process
GO:0016853 F isomerase activity
GO:0016868 F intramolecular transferase activity, phosphotransferases
GO:0019388 P galactose catabolic process
GO:0046331 P lateral inhibition
GO:0046872 F metal ion binding
GO:0060361 P flight
GO:0071704 P organic substance metabolic process
FPKM:3.50 TPM:1.56
2703 A_BomaMSG_c12911_g1_i1
709bp
uncharacterized_protein_LOC101736235_isoform_X2_[Bombyx_mori]
FPKM:3.61 TPM:1.61
2704 A_BomaMSG_c12912_g1_i1
351bp
putative_fatty_acyl-CoA_reductase_CG8306_[Bombyx_mori]
GO:0005777 C peroxisome
GO:0006629 P lipid metabolic process
GO:0010025 P wax biosynthetic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0035336 P long-chain fatty-acyl-CoA metabolic process
GO:0050062 F long-chain-fatty-acyl-CoA reductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0080019 F fatty-acyl-CoA reductase (alcohol-forming) activity
FPKM:6.02 TPM:2.69
2705 A_BomaMSG_c12913_g1_i1
785bp
heterochromatin_protein_1beta-like_protein_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000785 C chromatin
GO:0001939 C female pronucleus
GO:0001940 C male pronucleus
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005721 C pericentric heterochromatin
GO:0005819 C spindle
GO:0010369 C chromocenter
GO:0019899 F enzyme binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:1990226 F histone methyltransferase binding
FPKM:41.77 TPM:18.67
2706 A_BomaMSG_c12914_g1_i1
315bp
FPKM:4.48 TPM:2.00
2707 A_BomaMSG_c12915_g1_i1
214bp
FPKM:379.19 TPM:169.45
2708 A_BomaMSG_c12915_g2_i1
357bp
ribosomal_protein_L37A_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0007052 P mitotic spindle organization
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
FPKM:1061.43 TPM:474.32
2709 A_BomaMSG_c12917_g1_i1
1028bp
uncharacterized_protein_LOC101742950_[Bombyx_mori]
FPKM:1.56 TPM:0.70
2710 A_BomaMSG_c12917_g1_i2
767bp
uncharacterized_protein_LOC101742950_[Bombyx_mori]
FPKM:0.39 TPM:0.18
2711 A_BomaMSG_c12918_g1_i1
570bp
uncharacterized_protein_LOC101739504_[Bombyx_mori]
GO:0002250 P adaptive immune response
GO:0002376 P immune system process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:4.17 TPM:1.86
2712 A_BomaMSG_c12919_g1_i1
801bp
RH61266p_[Drosophila_melanogaster]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.90 TPM:1.29
2713 A_BomaMSG_c1291_g1_i1
354bp
FPKM:2.31 TPM:1.03
2714 A_BomaMSG_c12920_g1_i1
1156bp
uncharacterized_protein_LOC101737811_isoform_X3_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0000775 C chromosome, centromeric region
GO:0005515 F protein binding
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005813 C centrosome
GO:0006281 P DNA repair
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006914 P autophagy
GO:0006974 P cellular response to DNA damage stimulus
GO:0007051 P spindle organization
GO:0007059 P chromosome segregation
GO:0010508 P positive regulation of autophagy
GO:0017124 F SH3 domain binding
GO:0030496 C midbody
GO:0030897 C HOPS complex
GO:0032465 P regulation of cytokinesis
GO:0032801 P receptor catabolic process
GO:0035493 P SNARE complex assembly
GO:0043234 C protein-containing complex
GO:0045335 C phagocytic vesicle
GO:0046718 P viral entry into host cell
GO:0051297 P centrosome cycle
GO:0051684 P maintenance of Golgi location
GO:0060627 P regulation of vesicle-mediated transport
GO:0070418 C DNA-dependent protein kinase complex
GO:0071900 P regulation of protein serine/threonine kinase activity
GO:0071985 P multivesicular body sorting pathway
GO:0097352 P autophagosome maturation
GO:0097680 P double-strand break repair via classical nonhomologous end joining
FPKM:1.02 TPM:0.46
2715 A_BomaMSG_c12920_g1_i2
1127bp
uncharacterized_protein_LOC101737811_isoform_X3_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0000775 C chromosome, centromeric region
GO:0005515 F protein binding
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005813 C centrosome
GO:0006281 P DNA repair
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006914 P autophagy
GO:0006974 P cellular response to DNA damage stimulus
GO:0007051 P spindle organization
GO:0007059 P chromosome segregation
GO:0010508 P positive regulation of autophagy
GO:0017124 F SH3 domain binding
GO:0030496 C midbody
GO:0030897 C HOPS complex
GO:0032465 P regulation of cytokinesis
GO:0032801 P receptor catabolic process
GO:0035493 P SNARE complex assembly
GO:0043234 C protein-containing complex
GO:0045335 C phagocytic vesicle
GO:0046718 P viral entry into host cell
GO:0051297 P centrosome cycle
GO:0051684 P maintenance of Golgi location
GO:0060627 P regulation of vesicle-mediated transport
GO:0070418 C DNA-dependent protein kinase complex
GO:0071900 P regulation of protein serine/threonine kinase activity
GO:0071985 P multivesicular body sorting pathway
GO:0097352 P autophagosome maturation
GO:0097680 P double-strand break repair via classical nonhomologous end joining
FPKM:0.81 TPM:0.36
2716 A_BomaMSG_c12921_g1_i1
615bp
E3_SUMO-protein_ligase_NSE2_[Bombyx_mori]
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016874 F ligase activity
GO:0016925 P protein sumoylation
GO:0019789 F SUMO transferase activity
GO:0030915 C Smc5-Smc6 complex
GO:0034184 P positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0045842 P positive regulation of mitotic metaphase/anaphase transition
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0090398 P cellular senescence
FPKM:1.74 TPM:0.78
2717 A_BomaMSG_c12921_g2_i1
274bp
E3_SUMO-protein_ligase_NSE2_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2718 A_BomaMSG_c12922_g1_i1
458bp
GPI_inositol-deacylase_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006505 P GPI anchor metabolic process
GO:0006506 P GPI anchor biosynthetic process
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007605 P sensory perception of sound
GO:0009880 P embryonic pattern specification
GO:0009948 P anterior/posterior axis specification
GO:0015031 P protein transport
GO:0015798 P myo-inositol transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0021871 P forebrain regionalization
GO:0042578 F phosphoric ester hydrolase activity
GO:0060322 P head development
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:4.15 TPM:1.85
2719 A_BomaMSG_c12923_g1_i1
284bp
FPKM:1.50 TPM:0.67
2720 A_BomaMSG_c12924_g1_i1
661bp
protein_TIS11_isoform_X2_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006402 P mRNA catabolic process
GO:0007275 P multicellular organism development
GO:0030097 P hemopoiesis
GO:0035019 P somatic stem cell population maintenance
GO:0035925 F mRNA 3'-UTR AU-rich region binding
GO:0043488 P regulation of mRNA stability
GO:0046872 F metal ion binding
GO:0048103 P somatic stem cell division
GO:0048793 P pronephros development
GO:0060216 P definitive hemopoiesis
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000737 P negative regulation of stem cell differentiation
FPKM:3.03 TPM:1.35
2721 A_BomaMSG_c12926_g1_i1
600bp
FPKM:4.49 TPM:2.01
2722 A_BomaMSG_c12927_g1_i1
813bp
tRNA_(adenine(58)-N(1))-methyltransferase_catalytic_subunit_TRMT61A_[Bombyx_mori]
GO:0005634 C nucleus
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016429 F tRNA (adenine-N1-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0031515 C tRNA (m1A) methyltransferase complex
GO:0032259 P methylation
FPKM:2.94 TPM:1.32
2723 A_BomaMSG_c12929_g1_i1
273bp
FPKM:14.15 TPM:6.32
2724 A_BomaMSG_c1292_g1_i1
348bp
integrin_beta-nu_precursor_[Bombyx_mori]
FPKM:3.05 TPM:1.36
2725 A_BomaMSG_c12931_g1_i1
327bp
influenza_virus_NS1A-binding_protein-like_[Bombyx_mori]
FPKM:3.04 TPM:1.36
2726 A_BomaMSG_c12932_g1_i1
940bp
trithorax_group_protein_osa_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007406 P negative regulation of neuroblast proliferation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0014017 P neuroblast fate commitment
GO:0016055 P Wnt signaling pathway
GO:0016568 P chromatin organization
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0035060 C brahma complex
GO:0042058 P regulation of epidermal growth factor receptor signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046530 P photoreceptor cell differentiation
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0090544 C SWI/SNF superfamily-type complex
FPKM:3.92 TPM:1.75
2727 A_BomaMSG_c12933_g1_i1
323bp
up-regulated_during_skeletal_muscle_growth_protein_5_[Helicoverpa_armigera]
GO:0005739 C mitochondrion
GO:0005753 C mitochondrial proton-transporting ATP synthase complex
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
FPKM:62.89 TPM:28.10
2728 A_BomaMSG_c12934_g1_i1
938bp
TBC1_domain_family_member_20_isoform_X2_[Bombyx_mori]
GO:0001675 P acrosome assembly
GO:0002088 P lens development in camera-type eye
GO:0005096 F GTPase activator activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007030 P Golgi organization
GO:0007283 P spermatogenesis
GO:0008584 P male gonad development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017137 F small GTPase binding
GO:0019068 P virion assembly
GO:0030173 C integral component of Golgi membrane
GO:0031965 C nuclear membrane
GO:0034389 P lipid droplet organization
GO:0043010 P camera-type eye development
GO:0043547 P positive regulation of GTPase activity
GO:0044829 P positive regulation by host of viral genome replication
GO:0046726 P positive regulation by virus of viral protein levels in host cell
GO:0070309 P lens fiber cell morphogenesis
GO:0072520 P seminiferous tubule development
GO:0090110 P COPII-coated vesicle cargo loading
GO:1902953 P positive regulation of ER to Golgi vesicle-mediated transport
FPKM:3.67 TPM:1.64
2729 A_BomaMSG_c12936_g1_i1
438bp
probable_cysteine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004817 F cysteine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006423 P cysteinyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
FPKM:1.64 TPM:0.73
2730 A_BomaMSG_c12938_g1_i1
578bp
FPKM:6.92 TPM:3.09
previous next from show/42653

- SilkBase 1999-2023 -