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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2731 A_BomaMSG_c12939_g1_i1
427bp
FPKM:2.43 TPM:1.09
2732 A_BomaMSG_c12940_g1_i1
673bp
FPKM:2.83 TPM:1.27
2733 A_BomaMSG_c12941_g1_i1
585bp
synaptic_vesicle_glycoprotein_2B_[Bombyx_mori]
FPKM:4.18 TPM:1.87
2734 A_BomaMSG_c12942_g1_i1
456bp
uncharacterized_protein_LOC101736992_isoform_X1_[Bombyx_mori]
FPKM:1.98 TPM:0.88
2735 A_BomaMSG_c12943_g1_i1
225bp
huntingtin_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008134 F transcription factor binding
GO:0048513 P animal organ development
FPKM:5.25 TPM:2.35
2736 A_BomaMSG_c12944_g1_i1
362bp
FPKM:6.34 TPM:2.83
2737 A_BomaMSG_c12945_g1_i1
1227bp
TFIIB-related_factor_[Bombyx_mori]
GO:0000126 C transcription factor TFIIIB complex
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008270 F zinc ion binding
GO:0017025 F TBP-class protein binding
GO:0043488 P regulation of mRNA stability
GO:0046872 F metal ion binding
FPKM:3.19 TPM:1.42
2738 A_BomaMSG_c12946_g1_i1
660bp
nodal_modulator_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005789 C endoplasmic reticulum membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030246 F carbohydrate binding
FPKM:3.43 TPM:1.53
2739 A_BomaMSG_c12946_g2_i1
298bp
nodal_modulator_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005789 C endoplasmic reticulum membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030246 F carbohydrate binding
FPKM:9.07 TPM:4.05
2740 A_BomaMSG_c12947_g1_i1
383bp
FPKM:6.35 TPM:2.84
2741 A_BomaMSG_c12948_g1_i1
421bp
FPKM:2.23 TPM:1.00
2742 A_BomaMSG_c12949_g1_i1
580bp
FPKM:3.29 TPM:1.47
2743 A_BomaMSG_c1294_g1_i1
248bp
FPKM:25.12 TPM:11.23
2744 A_BomaMSG_c12950_g1_i1
351bp
alpha-tocopherol_transfer_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
FPKM:5.35 TPM:2.39
2745 A_BomaMSG_c12952_g1_i1
2383bp
KDEL_endoplasmic_reticulum_protein_retention_receptor_2_[Bombyx_mori]
GO:0005046 F KDEL sequence binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006621 P protein retention in ER lumen
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0019233 P sensory perception of pain
GO:0030140 C trans-Golgi network transport vesicle
GO:0046923 F ER retention sequence binding
FPKM:55.40 TPM:24.76
2746 A_BomaMSG_c12954_g1_i1
252bp
FPKM:1.31 TPM:0.58
2747 A_BomaMSG_c12956_g1_i1
444bp
FPKM:3.89 TPM:1.74
2748 A_BomaMSG_c12957_g1_i1
213bp
THAP_domain-containing_protein_5_isoform_X1_[Bombyx_mori]
FPKM:10.25 TPM:4.58
2749 A_BomaMSG_c12958_g1_i1
263bp
blastoderm-specific_protein_25D_[Bombyx_mori]
FPKM:4.73 TPM:2.11
2750 A_BomaMSG_c12958_g1_i2
371bp
blastoderm-specific_protein_25D_[Bombyx_mori]
FPKM:2.44 TPM:1.09
2751 A_BomaMSG_c12959_g1_i1
407bp
v-src_sarcoma_(Schmidt-Ruppin_A-2)_viral_oncogene_homolog_isoform_X4_[Bombyx_mori]
FPKM:10.21 TPM:4.56
2752 A_BomaMSG_c12960_g1_i1
234bp
uncharacterized_protein_LOC101738523_[Bombyx_mori]
FPKM:9.44 TPM:4.22
2753 A_BomaMSG_c12962_g1_i1
245bp
FPKM:24.92 TPM:11.13
2754 A_BomaMSG_c12963_g1_i1
285bp
FPKM:3.48 TPM:1.55
2755 A_BomaMSG_c12965_g1_i1
340bp
polyribonucleotide_nucleotidyltransferase_1,_mitochondrial_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000957 P mitochondrial RNA catabolic process
GO:0000958 P mitochondrial mRNA catabolic process
GO:0000962 P positive regulation of mitochondrial RNA catabolic process
GO:0000964 P mitochondrial RNA 5'-end processing
GO:0000965 P mitochondrial RNA 3'-end processing
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004654 F polyribonucleotide nucleotidyltransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0006810 P transport
GO:0008266 F poly(U) RNA binding
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0034046 F poly(G) binding
GO:0034599 P cellular response to oxidative stress
GO:0035198 F miRNA binding
GO:0035458 P cellular response to interferon-beta
GO:0035927 P RNA import into mitochondrion
GO:0035928 P rRNA import into mitochondrion
GO:0043457 P regulation of cellular respiration
GO:0043631 P RNA polyadenylation
GO:0044822 F RNA binding
GO:0045025 C mitochondrial degradosome
GO:0045926 P negative regulation of growth
GO:0051260 P protein homooligomerization
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070207 P protein homotrimerization
GO:0070584 P mitochondrion morphogenesis
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222 P mitochondrial mRNA polyadenylation
GO:2000627 P positive regulation of miRNA catabolic process
GO:2000772 P regulation of cellular senescence
FPKM:5.30 TPM:2.37
2756 A_BomaMSG_c12966_g1_i1
256bp
huntingtin_[Bombyx_mori]
FPKM:6.29 TPM:2.81
2757 A_BomaMSG_c12967_g1_i1
740bp
FPKM:1.94 TPM:0.87
2758 A_BomaMSG_c12968_g1_i1
568bp
FPKM:2.90 TPM:1.30
2759 A_BomaMSG_c12969_g1_i1
221bp
uncharacterized_protein_LOC101739635_[Bombyx_mori]
FPKM:2.76 TPM:1.23
2760 A_BomaMSG_c1296_g1_i1
330bp
sex-linked_proline_rich_protein,_partial_[Bombyx_mori]
FPKM:1.87 TPM:0.83
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