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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2551 A_BomaMSG_c12776_g1_i1
690bp
putative_DNA_helicase_Ino80_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000790 C chromatin
GO:0000975 F transcription cis-regulatory region binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031011 C Ino80 complex
GO:0032508 P DNA duplex unwinding
GO:0040034 P regulation of development, heterochronic
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:3.12 TPM:1.39
2552 A_BomaMSG_c12778_g1_i1
243bp
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC106131785_[Amyelois_transitella]
FPKM:0.71 TPM:0.32
2553 A_BomaMSG_c12779_g1_i1
237bp
FPKM:7.61 TPM:3.40
2554 A_BomaMSG_c1277_g1_i1
272bp
vang-like_protein_1_[Bombyx_mori]
GO:0000132 P establishment of mitotic spindle orientation
GO:0000902 P cell morphogenesis
GO:0001654 P eye development
GO:0001736 P establishment of planar polarity
GO:0001756 P somitogenesis
GO:0001764 P neuron migration
GO:0001839 P neural plate morphogenesis
GO:0001841 P neural tube formation
GO:0003401 P axis elongation
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0007015 P actin filament organization
GO:0007163 P establishment or maintenance of cell polarity
GO:0007275 P multicellular organism development
GO:0007369 P gastrulation
GO:0007399 P nervous system development
GO:0014812 P muscle cell migration
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0021535 P cell migration in hindbrain
GO:0021915 P neural tube development
GO:0030010 P establishment of cell polarity
GO:0030111 P regulation of Wnt signaling pathway
GO:0030154 P cell differentiation
GO:0030198 P extracellular matrix organization
GO:0030903 P notochord development
GO:0035844 P cloaca development
GO:0036342 P post-anal tail morphogenesis
GO:0042074 P cell migration involved in gastrulation
GO:0042384 P cilium assembly
GO:0044782 P cilium organization
GO:0045813 P positive regulation of Wnt signaling pathway, calcium modulating pathway
GO:0048048 P embryonic eye morphogenesis
GO:0048570 P notochord morphogenesis
GO:0048840 P otolith development
GO:0055002 P striated muscle cell development
GO:0060026 P convergent extension
GO:0060027 P convergent extension involved in gastrulation
GO:0060030 P dorsal convergence
GO:0060070 P canonical Wnt signaling pathway
GO:0060071 P Wnt signaling pathway, planar cell polarity pathway
GO:0060972 P left/right pattern formation
GO:0097475 P motor neuron migration
FPKM:0.55 TPM:0.25
2555 A_BomaMSG_c1277_g2_i1
238bp
vang-like_protein_1_[Bombyx_mori]
GO:0000132 P establishment of mitotic spindle orientation
GO:0000902 P cell morphogenesis
GO:0001654 P eye development
GO:0001736 P establishment of planar polarity
GO:0001756 P somitogenesis
GO:0001764 P neuron migration
GO:0001839 P neural plate morphogenesis
GO:0001841 P neural tube formation
GO:0003401 P axis elongation
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0007015 P actin filament organization
GO:0007163 P establishment or maintenance of cell polarity
GO:0007275 P multicellular organism development
GO:0007369 P gastrulation
GO:0007399 P nervous system development
GO:0014812 P muscle cell migration
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0021535 P cell migration in hindbrain
GO:0021915 P neural tube development
GO:0030010 P establishment of cell polarity
GO:0030111 P regulation of Wnt signaling pathway
GO:0030154 P cell differentiation
GO:0030198 P extracellular matrix organization
GO:0030903 P notochord development
GO:0035844 P cloaca development
GO:0036342 P post-anal tail morphogenesis
GO:0042074 P cell migration involved in gastrulation
GO:0042384 P cilium assembly
GO:0044782 P cilium organization
GO:0045813 P positive regulation of Wnt signaling pathway, calcium modulating pathway
GO:0048048 P embryonic eye morphogenesis
GO:0048570 P notochord morphogenesis
GO:0048840 P otolith development
GO:0055002 P striated muscle cell development
GO:0060026 P convergent extension
GO:0060027 P convergent extension involved in gastrulation
GO:0060030 P dorsal convergence
GO:0060070 P canonical Wnt signaling pathway
GO:0060071 P Wnt signaling pathway, planar cell polarity pathway
GO:0060972 P left/right pattern formation
GO:0097475 P motor neuron migration
FPKM:1.51 TPM:0.67
2556 A_BomaMSG_c12780_g1_i1
232bp
PREDICTED:_uncharacterized_protein_LOC106115905,_partial_[Papilio_xuthus]
FPKM:2.41 TPM:1.08
2557 A_BomaMSG_c12781_g1_i1
877bp
FPKM:47.60 TPM:21.27
2558 A_BomaMSG_c12782_g1_i1
345bp
nudix_hydrolase_8_[Bombyx_mori]
FPKM:8.27 TPM:3.70
2559 A_BomaMSG_c12783_g1_i1
376bp
FPKM:0.59 TPM:0.27
2560 A_BomaMSG_c12784_g1_i1
254bp
DNA_cytosine-5_methyltransferase_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003886 F DNA (cytosine-5-)-methyltransferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007265 P Ras protein signal transduction
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
GO:0090116 P C-5 methylation of cytosine
GO:0090309 P positive regulation of DNA methylation-dependent heterochromatin assembly
GO:1990841 F promoter-specific chromatin binding
FPKM:3.21 TPM:1.43
2561 A_BomaMSG_c12784_g2_i1
443bp
DNA_cytosine-5_methyltransferase_isoform_X1_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2562 A_BomaMSG_c12784_g2_i2
579bp
DNA-C5-methyltransferase-1_[Bombyx_mori]
FPKM:1.57 TPM:0.70
2563 A_BomaMSG_c12785_g1_i1
201bp
FPKM:2.46 TPM:1.10
2564 A_BomaMSG_c12786_g1_i1
335bp
FPKM:1.09 TPM:0.49
2565 A_BomaMSG_c12789_g1_i1
451bp
cytochrome_b-c1_complex_subunit_8-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008121 F ubiquinol-cytochrome-c reductase activity
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0021539 P subthalamus development
GO:0021548 P pons development
GO:0021680 P cerebellar Purkinje cell layer development
GO:0021766 P hippocampus development
GO:0021794 P thalamus development
GO:0021854 P hypothalamus development
GO:0021860 P pyramidal neuron development
GO:0030901 P midbrain development
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
GO:1902600 P proton transmembrane transport
FPKM:53.19 TPM:23.77
2566 A_BomaMSG_c1278_g1_i1
287bp
LOW_QUALITY_PROTEIN:_spectrin_beta_chain,_non-erythrocytic_2_[Bombyx_mori]
FPKM:2.45 TPM:1.09
2567 A_BomaMSG_c12791_g1_i1
403bp
FPKM:2.92 TPM:1.31
2568 A_BomaMSG_c12792_g1_i1
375bp
FPKM:2.99 TPM:1.34
2569 A_BomaMSG_c12793_g1_i1
417bp
torsin-like_protein_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005635 C nuclear envelope
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006457 P protein folding
GO:0016887 F ATP hydrolysis activity
GO:0040011 P locomotion
GO:0042053 P regulation of dopamine metabolic process
GO:0043104 P positive regulation of GTP cyclohydrolase I activity
GO:0048085 P adult chitin-containing cuticle pigmentation
GO:0051085 P chaperone cofactor-dependent protein refolding
GO:0071426 P obsolete ribonucleoprotein complex export from nucleus
FPKM:5.04 TPM:2.25
2570 A_BomaMSG_c12794_g1_i1
422bp
septin_and_tuftelin_interacting_protein_isoform_X2_[Bombyx_mori]
GO:0000390 P spliceosomal complex disassembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004004 F RNA helicase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0071008 C U2-type post-mRNA release spliceosomal complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:2.47 TPM:1.11
2571 A_BomaMSG_c12795_g1_i1
718bp
uncharacterized_protein_LOC101742950_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007265 P Ras protein signal transduction
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0046872 F metal ion binding
GO:0090309 P positive regulation of DNA methylation-dependent heterochromatin assembly
GO:1990841 F promoter-specific chromatin binding
FPKM:1.90 TPM:0.85
2572 A_BomaMSG_c12796_g1_i1
435bp
FPKM:5.43 TPM:2.43
2573 A_BomaMSG_c12798_g1_i1
395bp
U6_snRNA-associated_Sm-like_protein_LSm6_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0005730 C nucleolus
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006402 P mRNA catabolic process
GO:0008033 P tRNA processing
GO:0008380 P RNA splicing
GO:0030490 P maturation of SSU-rRNA
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0046982 F protein heterodimerization activity
GO:0070062 C extracellular exosome
FPKM:6.31 TPM:2.82
2574 A_BomaMSG_c12799_g1_i1
1017bp
C-terminal-binding_protein_isoform_X1_[Bombyx_mori]
FPKM:35.72 TPM:15.96
2575 A_BomaMSG_c1279_g1_i1
494bp
FPKM:2.15 TPM:0.96
2576 A_BomaMSG_c12800_g1_i1
611bp
FPKM:1.90 TPM:0.85
2577 A_BomaMSG_c12801_g1_i1
248bp
FPKM:2.72 TPM:1.21
2578 A_BomaMSG_c12802_g1_i1
852bp
protein_cappuccino_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030029 P actin filament-based process
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
FPKM:4.03 TPM:1.80
2579 A_BomaMSG_c12805_g1_i1
781bp
replication_factor_C_subunit_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005663 C DNA replication factor C complex
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0046331 P lateral inhibition
GO:0048813 P dendrite morphogenesis
FPKM:3.84 TPM:1.72
2580 A_BomaMSG_c12807_g1_i1
203bp
FPKM:3.57 TPM:1.60
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