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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2281 A_BomaMSG_c12466_g1_i1
230bp
FPKM:5.76 TPM:2.58
2282 A_BomaMSG_c12468_g1_i1
233bp
FPKM:4.77 TPM:2.13
2283 A_BomaMSG_c12469_g1_i1
244bp
spastin_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0008568 F microtubule-severing ATPase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031117 P positive regulation of microtubule depolymerization
GO:0031122 P cytoplasmic microtubule organization
GO:0034214 P protein hexamerization
GO:0051013 P microtubule severing
FPKM:2.12 TPM:0.95
2284 A_BomaMSG_c1246_g1_i1
589bp
PREDICTED:_uncharacterized_protein_LOC105389737_[Plutella_xylostella]
FPKM:1.53 TPM:0.69
2285 A_BomaMSG_c12471_g1_i1
558bp
FPKM:3.30 TPM:1.47
2286 A_BomaMSG_c12473_g1_i1
483bp
regucalcin_isoform_X3_[Bombyx_mori]
GO:0004341 F gluconolactonase activity
GO:0005509 F calcium ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006874 P cellular calcium ion homeostasis
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0019853 P L-ascorbic acid biosynthetic process
GO:0030234 F enzyme regulator activity
GO:0032781 P positive regulation of ATP-dependent activity
GO:0046872 F metal ion binding
GO:0050848 P regulation of calcium-mediated signaling
FPKM:1.82 TPM:0.81
2287 A_BomaMSG_c12474_g1_i1
223bp
FPKM:16.14 TPM:7.21
2288 A_BomaMSG_c12475_g1_i1
371bp
protein_timeless_homolog_isoform_X4_[Bombyx_mori]
GO:0001658 P branching involved in ureteric bud morphogenesis
GO:0001822 P kidney development
GO:0002009 P morphogenesis of an epithelium
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0007623 P circadian rhythm
GO:0042752 P regulation of circadian rhythm
GO:0042753 P positive regulation of circadian rhythm
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
GO:0051301 P cell division
FPKM:2.13 TPM:0.95
2289 A_BomaMSG_c12476_g1_i1
260bp
FPKM:2.43 TPM:1.09
2290 A_BomaMSG_c1247_g1_i1
591bp
uncharacterized_protein_LOC101742695_[Bombyx_mori]
FPKM:1.98 TPM:0.89
2291 A_BomaMSG_c12480_g1_i1
226bp
FPKM:7.78 TPM:3.47
2292 A_BomaMSG_c12481_g1_i1
369bp
FPKM:2.15 TPM:0.96
2293 A_BomaMSG_c12489_g1_i1
517bp
calpain-A_isoform_X2_[Bombyx_mori]
GO:0004198 F calcium-dependent cysteine-type endopeptidase activity
GO:0005509 F calcium ion binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006909 P phagocytosis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008340 P determination of adult lifespan
GO:0009953 P dorsal/ventral pattern formation
GO:0015629 C actin cytoskeleton
GO:0016540 P protein autoprocessing
GO:0016787 F hydrolase activity
GO:0021919 P BMP signaling pathway involved in spinal cord dorsal/ventral patterning
GO:0030036 P actin cytoskeleton organization
GO:0042335 P cuticle development
GO:0043025 C neuronal cell body
GO:0046872 F metal ion binding
GO:0050832 P defense response to fungus
FPKM:2.20 TPM:0.98
2294 A_BomaMSG_c1248_g1_i1
217bp
FPKM:2.91 TPM:1.30
2295 A_BomaMSG_c12490_g1_i1
209bp
FPKM:5.43 TPM:2.43
2296 A_BomaMSG_c12491_g1_i1
252bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744024_[Bombyx_mori]
FPKM:6.53 TPM:2.92
2297 A_BomaMSG_c12492_g1_i1
222bp
FPKM:5.45 TPM:2.44
2298 A_BomaMSG_c12492_g2_i1
323bp
FPKM:4.66 TPM:2.08
2299 A_BomaMSG_c12495_g1_i1
220bp
FPKM:6.52 TPM:2.92
2300 A_BomaMSG_c12497_g1_i1
289bp
FPKM:5.79 TPM:2.59
2301 A_BomaMSG_c12498_g1_i1
236bp
FPKM:9.23 TPM:4.13
2302 A_BomaMSG_c1249_g1_i1
243bp
FPKM:12.85 TPM:5.74
2303 A_BomaMSG_c124_g1_i1
449bp
filamin-A_[Bombyx_mori]
FPKM:2.47 TPM:1.11
2304 A_BomaMSG_c12500_g1_i1
470bp
THAP_domain-containing_protein_9_[Cyphomyrmex_costatus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004803 F transposase activity
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:3.57 TPM:1.60
2305 A_BomaMSG_c12501_g1_i1
490bp
cytochrome_b561_isoform_X3_[Bombyx_mori]
GO:0000293 F ferric-chelate reductase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022865 F obsolete transmembrane electron transfer carrier
GO:0022900 P electron transport chain
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0046872 F metal ion binding
GO:0055085 P transmembrane transport
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.37 TPM:1.06
2306 A_BomaMSG_c12501_g1_i2
254bp
cytochrome_b561_isoform_X1_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0031902 C late endosome membrane
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.00 TPM:0.00
2307 A_BomaMSG_c12503_g1_i1
258bp
probable_ATP-dependent_RNA_helicase_DHX34_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2308 A_BomaMSG_c12503_g1_i2
582bp
probable_ATP-dependent_RNA_helicase_DHX34_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
FPKM:2.18 TPM:0.97
2309 A_BomaMSG_c12504_g1_i1
270bp
protein_alan_shepard_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0009629 P response to gravity
FPKM:2.79 TPM:1.25
2310 A_BomaMSG_c12504_g2_i1
262bp
protein_alan_shepard_isoform_X9_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0009629 P response to gravity
FPKM:1.79 TPM:0.80
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