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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2311 A_BomaMSG_c12508_g1_i1
323bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_CG7065_[Bombyx_mori]
FPKM:3.49 TPM:1.56
2312 A_BomaMSG_c12509_g1_i1
242bp
microtubule-associated_serine/threonine-protein_kinase_3_isoform_X7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006468 P protein phosphorylation
GO:0007010 P cytoskeleton organization
GO:0008017 F microtubule binding
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0019902 F phosphatase binding
GO:0030054 C cell junction
GO:0035556 P intracellular signal transduction
GO:0045075 P regulation of interleukin-12 production
GO:0046872 F metal ion binding
GO:0048515 P spermatid differentiation
FPKM:6.49 TPM:2.90
2313 A_BomaMSG_c12510_g1_i1
220bp
histone_H4_transcription_factor_isoform_X2_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000083 P regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001701 P in utero embryonic development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010468 P regulation of gene expression
GO:0010628 P positive regulation of gene expression
GO:0010629 P negative regulation of gene expression
GO:0015030 C Cajal body
GO:0019899 F enzyme binding
GO:0042393 F histone binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045184 P establishment of protein localization
GO:0045445 P myoblast differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.86 TPM:0.83
2314 A_BomaMSG_c12510_g2_i1
204bp
histone_H4_transcription_factor_isoform_X2_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000083 P regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001701 P in utero embryonic development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010468 P regulation of gene expression
GO:0010628 P positive regulation of gene expression
GO:0010629 P negative regulation of gene expression
GO:0015030 C Cajal body
GO:0019899 F enzyme binding
GO:0042393 F histone binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045184 P establishment of protein localization
GO:0045445 P myoblast differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.17 TPM:0.52
2315 A_BomaMSG_c12511_g1_i1
260bp
ubiquitin-conjugating_enzyme_E2_T_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006513 P protein monoubiquitination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0035519 P protein K29-linked ubiquitination
GO:0036297 P interstrand cross-link repair
GO:0044314 P protein K27-linked ubiquitination
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0070979 P protein K11-linked ubiquitination
GO:0085020 P protein K6-linked ubiquitination
FPKM:0.00 TPM:0.00
2316 A_BomaMSG_c12511_g1_i2
692bp
ubiquitin-conjugating_enzyme_E2_T_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006513 P protein monoubiquitination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0035519 P protein K29-linked ubiquitination
GO:0036297 P interstrand cross-link repair
GO:0044314 P protein K27-linked ubiquitination
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0070979 P protein K11-linked ubiquitination
GO:0085020 P protein K6-linked ubiquitination
FPKM:3.35 TPM:1.50
2317 A_BomaMSG_c12512_g1_i1
269bp
FPKM:3.93 TPM:1.76
2318 A_BomaMSG_c12514_g1_i1
333bp
hypothetical_protein_RR48_03773_[Papilio_machaon]
FPKM:0.00 TPM:0.00
2319 A_BomaMSG_c12514_g1_i2
412bp
hypothetical_protein_RR48_03773_[Papilio_machaon]
FPKM:1.80 TPM:0.80
2320 A_BomaMSG_c12518_g1_i1
251bp
FPKM:2.64 TPM:1.18
2321 A_BomaMSG_c12519_g1_i1
554bp
FPKM:1.33 TPM:0.59
2322 A_BomaMSG_c12519_g1_i2
295bp
FPKM:1.41 TPM:0.63
2323 A_BomaMSG_c12520_g1_i1
730bp
H+_transporting_ATP_synthase_subunit_d_[Bombyx_mori]
GO:0000276 C mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005811 C lipid droplet
GO:0005875 C microtubule associated complex
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006979 P response to oxidative stress
GO:0008340 P determination of adult lifespan
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0032007 P negative regulation of TOR signaling
GO:0045263 C proton-transporting ATP synthase complex, coupling factor F(o)
GO:0046034 P ATP metabolic process
GO:0046933 F proton-transporting ATP synthase activity, rotational mechanism
GO:0051881 P regulation of mitochondrial membrane potential
GO:0070373 P negative regulation of ERK1 and ERK2 cascade
FPKM:190.79 TPM:85.26
2324 A_BomaMSG_c12521_g1_i1
632bp
cadherin-87A_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0044331 P cell-cell adhesion mediated by cadherin
GO:0046872 F metal ion binding
FPKM:2.51 TPM:1.12
2325 A_BomaMSG_c12522_g1_i1
201bp
FPKM:12.29 TPM:5.49
2326 A_BomaMSG_c12523_g1_i1
399bp
FPKM:6.48 TPM:2.90
2327 A_BomaMSG_c12525_g1_i1
230bp
FPKM:21.41 TPM:9.57
2328 A_BomaMSG_c12526_g1_i1
261bp
uncharacterized_protein_LOC101737750_[Bombyx_mori]
FPKM:3.01 TPM:1.34
2329 A_BomaMSG_c12527_g1_i1
619bp
FPKM:2.58 TPM:1.15
2330 A_BomaMSG_c12528_g1_i1
626bp
PREDICTED:_2',5'-phosphodiesterase_12_isoform_X1_[Papilio_machaon]
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006397 P mRNA processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:4.38 TPM:1.96
2331 A_BomaMSG_c12529_g1_i1
249bp
FPKM:0.00 TPM:0.00
2332 A_BomaMSG_c1252_g1_i1
897bp
uncharacterized_protein_LOC101736416_[Bombyx_mori]
FPKM:2.61 TPM:1.17
2333 A_BomaMSG_c12531_g1_i1
578bp
protein_FAN_isoform_X2_[Bombyx_mori]
GO:0005057 F obsolete signal transducer activity, downstream of receptor
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006672 P ceramide metabolic process
GO:0007165 P signal transduction
GO:0012505 C endomembrane system
GO:0016230 F sphingomyelin phosphodiesterase activator activity
GO:0019898 C extrinsic component of membrane
GO:0043065 P positive regulation of apoptotic process
GO:0043085 P positive regulation of catalytic activity
GO:2000304 P positive regulation of ceramide biosynthetic process
FPKM:1.73 TPM:0.77
2334 A_BomaMSG_c12532_g1_i1
269bp
FPKM:3.37 TPM:1.51
2335 A_BomaMSG_c12533_g1_i1
260bp
FPKM:4.25 TPM:1.90
2336 A_BomaMSG_c12534_g1_i1
220bp
FPKM:6.52 TPM:2.92
2337 A_BomaMSG_c12536_g1_i1
231bp
FPKM:1.63 TPM:0.73
2338 A_BomaMSG_c12538_g1_i1
229bp
PREDICTED:_uncharacterized_protein_PF11_0213-like_[Papilio_machaon]
FPKM:1.67 TPM:0.74
2339 A_BomaMSG_c12539_g1_i1
823bp
kanadaptin_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0043231 C intracellular membrane-bounded organelle
FPKM:4.10 TPM:1.83
2340 A_BomaMSG_c12540_g1_i1
249bp
hypothetical_protein_H311_00416_[Anncaliia_algerae_PRA109]
FPKM:4.03 TPM:1.80
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